Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004079 |
| gene name | NA |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 32400405 ~ 32402383 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0046835 | carbohydrate phosphorylation | biological_process |
| GO:0006014 | D-ribose metabolic process | biological_process |
| GO:0004747 | ribokinase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004079 | False | 276 | mRNA | 0.61 | 2 | 32400546 | 32402338 |
| TU6774 | True | 462 | lncRNA | 0.31 | 2 | 32400405 | 32402383 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004075 | NA | coding | upstream | 53810 | 32335392 ~ 32346595 (+) |
| AMCG00004078 | NA | coding | upstream | 71233 | 32305491 ~ 32329172 (+) |
| AMCG00004071 | LOC105894840,LOC108443926 | coding | upstream | 1029247 | 31370382 ~ 31371158 (+) |
| AMCG00004066 | NA | coding | upstream | 1337696 | 31047145 ~ 31062709 (+) |
| AMCG00004067 | NA | coding | upstream | 1360668 | 31030418 ~ 31039737 (+) |
| AMCG00004080 | bre | coding | downstream | 26076 | 32428459 ~ 32428913 (+) |
| AMCG00004083 | bre,LOC104968080 | coding | downstream | 47024 | 32449407 ~ 32455846 (+) |
| AMCG00004081 | bre | coding | downstream | 97090 | 32499473 ~ 32529839 (+) |
| AMCG00004082 | NA | coding | downstream | 156596 | 32558979 ~ 32559365 (+) |
| AMCG00004086 | NA | coding | downstream | 169196 | 32571579 ~ 32582699 (+) |
| G5529 | NA | non-coding | upstream | 12870 | 32384435 ~ 32387535 (+) |
| G5527 | NA | non-coding | upstream | 16726 | 32383409 ~ 32383679 (+) |
| G5522 | NA | non-coding | upstream | 50302 | 32348390 ~ 32350103 (+) |
| G5501 | NA | non-coding | upstream | 90493 | 32309505 ~ 32309912 (+) |
| G5499 | NA | non-coding | upstream | 131334 | 32268748 ~ 32269071 (+) |
| G5569 | NA | non-coding | downstream | 209450 | 32611833 ~ 32612051 (+) |
| G5662 | NA | non-coding | downstream | 1035945 | 33438328 ~ 33445420 (+) |
| G5680 | NA | non-coding | downstream | 1070653 | 33473036 ~ 33473330 (+) |
| G5681 | NA | non-coding | downstream | 1072459 | 33474842 ~ 33475047 (+) |
| G5688 | NA | non-coding | downstream | 1163790 | 33566173 ~ 33567479 (+) |
| AMCG00004056 | ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 | other | upstream | 1505578 | 30887995 ~ 30894827 (+) |
| AMCG00004039 | NA | other | upstream | 2093230 | 30296867 ~ 30307175 (+) |
| G5245 | NA | other | upstream | 2128881 | 30271210 ~ 30271524 (+) |
| AMCG00004011 | ccnc | other | upstream | 2859047 | 29527414 ~ 29541358 (+) |
| AMCG00003993 | NA | other | upstream | 3716424 | 28640174 ~ 28683981 (+) |
| G5642 | NA | other | downstream | 727737 | 33130120 ~ 33131186 (+) |
| AMCG00004138 | fkbp1b | other | downstream | 2450480 | 34852863 ~ 34870320 (+) |
| AMCG00004158 | NA | other | downstream | 3350067 | 35752450 ~ 35766180 (+) |
| AMCG00004160 | LOC106571404,LOC106607809,LOC105897019 | other | downstream | 3624896 | 36027279 ~ 36045282 (+) |
| AMCG00004167 | NA | other | downstream | 3859405 | 36261788 ~ 36278234 (+) |
