AMCG00004080 (bre)


Basic Information

Item Value
gene id AMCG00004080
gene name bre
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32428459 ~ 32428913 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004080
AGGAAGATGAACAGTATGTCCCCTGAGGTAGCATTGAACCGCATCTCCCCTGAGCTGCGCCCCATGCTGTCCAGCGTGGTCCGGAACGGTCGTGTGGGCCTGGATTCCACTGGCTGCCTCCGCATCACCGATCTGAAGACAGGGTGCACTTCCCTGACGCCAGGCCCCTGCTGTGACCGCTTCAAACTACACATCCCCTATGCGGGAGAGACACTCAAGTGTAAGTGTGTCTTTATGGGTGGATTTACTTCATGTGATGTAGATGAAGGCTAA

Function

symbol description
bre BRCA1-A complex subunit BRE

NR:

description
PREDICTED: BRCA1-A complex subunit BRE isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004080 True 273 mRNA 0.55 2 32428459 32428913

Neighbor

gene id symbol gene type direction distance location
AMCG00004075 NA coding upstream 81864 32335392 ~ 32346595 (+)
AMCG00004078 NA coding upstream 99287 32305491 ~ 32329172 (+)
AMCG00004071 LOC105894840,LOC108443926 coding upstream 1057301 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 1365750 31047145 ~ 31062709 (+)
AMCG00004067 NA coding upstream 1388722 31030418 ~ 31039737 (+)
AMCG00004083 bre,LOC104968080 coding downstream 20494 32449407 ~ 32455846 (+)
AMCG00004081 bre coding downstream 70560 32499473 ~ 32529839 (+)
AMCG00004082 NA coding downstream 130066 32558979 ~ 32559365 (+)
AMCG00004086 NA coding downstream 142666 32571579 ~ 32582699 (+)
AMCG00004084 mocs1 coding downstream 154627 32583540 ~ 32596401 (+)
G5529 NA non-coding upstream 40924 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 44780 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 78356 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 118547 32309505 ~ 32309912 (+)
G5499 NA non-coding upstream 159388 32268748 ~ 32269071 (+)
G5569 NA non-coding downstream 182920 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 1009415 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 1044123 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 1045929 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 1137260 33566173 ~ 33567479 (+)
AMCG00004079 NA other upstream 26076 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1533632 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2121284 30296867 ~ 30307175 (+)
G5245 NA other upstream 2156935 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2887101 29527414 ~ 29541358 (+)
G5642 NA other downstream 701207 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2423950 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3323537 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3598366 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3832875 36261788 ~ 36278234 (+)

Expression


Co-expression Network