AMCG00004083 (bre,LOC104968080)


Basic Information

Item Value
gene id AMCG00004083
gene name bre,LOC104968080
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32449407 ~ 32455846 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004083
ATGagtaattttcttttaaagCACCTACTGAGCTGGGACGCGGGTGATGCAGAGTGCCTCCTGCAGCTGGTGAAGGAGCTGATCCAACAGTACCACCAGTACCAGTGTGAGCGGCTGCGCGAGAGCTCCCGTCTGCTGTTTGAGTATGACAGCCTACTGGAGGACCCCAACTACAGCCGCAGCATGGAGATCTATGCTGGCCGCAAGAACAGCTGGACGGGGGAGTTCTCTGCGCGTTTCCTCCTGAAGCTCCCGGTGGACTTCAGCAACATCCCGGTCTATCTCCTGAAGGTAGGAGCGTCCCCTGCGCCGCGTGTCACAGCATAA

Function

symbol description
bre BRCA1-A complex subunit BRE

NR:

description
PREDICTED: BRCA1-A complex subunit BRE

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004083 True 327 mRNA 0.57 3 32449407 32455846

Neighbor

gene id symbol gene type direction distance location
AMCG00004080 bre coding upstream 20494 32428459 ~ 32428913 (+)
AMCG00004075 NA coding upstream 102812 32335392 ~ 32346595 (+)
AMCG00004078 NA coding upstream 120235 32305491 ~ 32329172 (+)
AMCG00004071 LOC105894840,LOC108443926 coding upstream 1078249 31370382 ~ 31371158 (+)
AMCG00004066 NA coding upstream 1386698 31047145 ~ 31062709 (+)
AMCG00004081 bre coding downstream 43627 32499473 ~ 32529839 (+)
AMCG00004082 NA coding downstream 103133 32558979 ~ 32559365 (+)
AMCG00004086 NA coding downstream 115733 32571579 ~ 32582699 (+)
AMCG00004084 mocs1 coding downstream 127694 32583540 ~ 32596401 (+)
AMCG00004085 NA coding downstream 142607 32598453 ~ 32600592 (+)
G5529 NA non-coding upstream 61872 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 65728 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 99304 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 139495 32309505 ~ 32309912 (+)
G5499 NA non-coding upstream 180336 32268748 ~ 32269071 (+)
G5569 NA non-coding downstream 155987 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 982482 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 1017190 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 1018996 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 1110327 33566173 ~ 33567479 (+)
AMCG00004079 NA other upstream 47024 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1554580 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2142232 30296867 ~ 30307175 (+)
G5245 NA other upstream 2177883 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2908049 29527414 ~ 29541358 (+)
G5642 NA other downstream 674274 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2397017 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3296604 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3571433 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3805942 36261788 ~ 36278234 (+)

Expression


Co-expression Network