AMCG00004089


Basic Information

Item Value
gene id AMCG00004089
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32814743 ~ 32836681 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004089
ATGCAGTATCTTTTTGTTGGTCTAAGGGTGGCAGACAGCACTGCAGACCTGGCTGAAGCTGACCCAGTGGAGGAGCAGCTTCGTCAGCAAAtcgaagaagaaaagaagagTTTTAAAGCTACCTTCAGCCGACTGAAGGGGCTGAAGACTGAGATTGAACACTTGCAGCTGCTGCTGAAGAGAGGCAAATTGAAGTTGCTGAAGGACTTTGAAGTGTGGTGGTCTGAGGAGGCGTCAAGGCTGCAGGAGCAAGGGTCAGAAGACTCAGCtgcaggtcagaggtcagggttGACCCGTCAGCAGGATGTTCCAGGAGCCCAGAGCAGTGGTCCCTTCATGAGGGAGCCCCTAGTAGCCAGAGCTGGCCCTGAGAGAGAGTCTTTATGGAGGGGAGACACAGGGACCTACACCTCTGCCCAAGATCTGAGaaactTTAAACCACATCTGCCTTCTGCATCTAGAGAGTCAGAGAACAGAAGCAATTTGGACAGCAGGACTTCTTCACAGTCATCAGAGCTGAGGGCTCTGGGCTCCTCCATCCCCCTGACTGGAGACGAGCAGGTTGACGCCGACATCCTGGGCTTCTACAGGGCCAGGCAGACGCTGATGCAGAAATTAGGTAAGCTTGTGTCCGGCATCCACTCCAGCCTGTCAGTCCGTCGGCCTTTGACAACTGCTAGCCTGAGGGCAGCCATTCTGCAGGTCCAGCTGTGCTCCTCTGGACTGGTCTTGCTCCACCAAGAGCAACCCTCCTCACCAGCAGCCAGCAGAGGAGCCCCACTCAGTGCTTCAGCCCAGTGGTGCATCCCCCTCGGAGGGGTCATGGCTCGCTTCCAGGTGGGCAGCATTCGAGTCAGCTGGACGGGCCTGCTGGTCCTCAGCTACTCCCTGTACCTGCTCATCGGCGCTACCATCTTCCAGATCCTGGAGAGAGCGGCAGAGAGCCAGAACCGGGACCATTTTCAGCTGGAGAAGCTCAAATTCCTCAAAAACTACAGCTGTCTGGATGGGCCGGCTCTGGAGAGGTTTGTGcagGTGATCCTGGATGCCTGGGAGAAGGGGGTGAATCCCTCAGGGAACTCCACCAACCCCAGCAACTGGGACTTCAGCAGCTCCTTCTTCTTCGCTGGCACCGTTATCACCACTATAGGCAAGTCTGACCCTCAAGCCCTTTGCTATGGGAACCTGTCCCCCAGCACGGTGTCTGGCCAGGTGTTCTGTGTGTTCTACGCCCTGTGTGGGATCCCACTCAACCTGGCCTTCCTCAACCAGCTGGGCAAGGGCCTGACTGCACACCTGGGTCGATTGGAGAGGAGCGTGCTCATCACTGGACAGCATGAGAGAGCCCCAGCAGATCTGCCAGCAGTCCACTGGACAGATCCAGAGAAGCACTACATCTCCATATACCGTAGCCTGGCTGGCGTATGGATCATCTTCGGCCTAGCCTGGCTGGCCTTGCTGTTTAACCTGGGTGCCGGCATGATGGAGCGGCTTTTTCAGCTGAAGCACATTGCCTGCCAGCCCCCACCAGAGGAGGGGGCACAGACCAAGCAAAGCAAGATCCGGGAGCAGAGAACCATCCAGCAGGCAATCTGA

Function

GO: NA

KEGG:

id description
K04924 KCNK16, K2P16.1; potassium channel subfamily K member 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004089 True 1596 mRNA 0.57 12 32814743 32836681

Neighbor

gene id symbol gene type direction distance location
AMCG00004087 kif6 coding upstream 39931 32728660 ~ 32774812 (+)
AMCG00004085 NA coding upstream 214151 32598453 ~ 32600592 (+)
AMCG00004084 mocs1 coding upstream 218342 32583540 ~ 32596401 (+)
AMCG00004086 NA coding upstream 232044 32571579 ~ 32582699 (+)
AMCG00004082 NA coding upstream 255378 32558979 ~ 32559365 (+)
AMCG00004088 NA coding downstream 2283 32838964 ~ 32844650 (+)
AMCG00004093 NA coding downstream 40129 32876810 ~ 32900670 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding downstream 100724 32937405 ~ 32946916 (+)
AMCG00004099 NA coding downstream 295674 33132355 ~ 33135491 (+)
AMCG00004101 NA coding downstream 300955 33137636 ~ 33142538 (+)
G5569 NA non-coding upstream 202692 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 427208 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 431064 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 464640 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 504831 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 601647 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 636355 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 638161 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 729492 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 761211 33597892 ~ 33600011 (+)
AMCG00004079 NA other upstream 412360 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1919916 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2507568 30296867 ~ 30307175 (+)
G5245 NA other upstream 2543219 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 3273385 29527414 ~ 29541358 (+)
G5642 NA other downstream 293439 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2016182 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2915769 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3190598 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3425107 36261788 ~ 36278234 (+)

Expression


Co-expression Network