AMCG00004092 (gnmt,LOC107748599,LOC107566124)


Basic Information

Item Value
gene id AMCG00004092
gene name gnmt,LOC107748599,LOC107566124
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32937405 ~ 32946916 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004092
agagaaaagagaggaagagagaaaagggTGAGAGCGGTACGGCATCTGAGCGAGCCCGGTTTAGcagtattcattattattagtggcACACAGCTCCGTTTCCTTGCTTGCAGTTAGCAGTAGTGAAGTGTAGAGATGGTGGACAGTGTTTACAGGACCCGCTCTCTCGGGGTAGCTGCGGTCGGGCTGCCAGATCAGTACGCAGACGGGAAGGCAGCGAAAGTGTGGCAGCTGTACATCGGGGACACCCGGAGCAGGACTGACGAGTACAAGAGCTGGGTGCTGTCTCTGCTCCGCAAGCACGGCTGCCAGAGGGTGCTGGATGTAGCCTGCGGTACAGGGGTCGACTCCATCATGCTGGTGGAGGAGGGCTTCAAGTTGGTGAGCGTGGACGCCAGTGACAAGATGCTGAAGTACGCGCTGAAGGCCAGGTGGGACAGGAGGAAAGAGGCCGCCTTCGACCAGTGGGagATTGAAGAGGCTAACTGGCTTACATTACCAGACGACGTGCAGAAGCCAGGAGATGGGTTTGACGCAGTCATCTGCCTGGGAAACTCATTCGCCCACTTGCCAGATTTCAAAGGGGACCAGAGTGATATCAAGCTGGCGCTGACAAACATAGCCAGCATGGTGAAGCCTGGTGGGATCCTGATCATTGACCACCGGAATTACGACTACATCCTGAAAACAGGGAAAGCCCCTCAGGGAAAGAACATCTACTACAAGAGTGATCTGACTCAGGACATCTCCACATCAGTGCTGTGGGTGAACAGCAAGCCCCACATGATCACTCTGGACTATACCGTGCAGGTCCCCAAGCAGAAGGGAGCTGAGGAGACACCTGAGCTCAGtaagTTCCGCCTGTCCTACTACCCTCACCAGCTGGACAACTTCAAGGAGCTGCTGAGAGAGGCGTTCAGGGGGAAGTGTGAGCAGAGTGTGTTCGGCGACTTTAAGAGCTACGATCCCAGTACAGACCAGGCCCCTTGCTACTTCATCCACGTGGTCAAGAAGACCGCCTAGGCCCCAGCTGCATGACCTGCTGATGTTGAGATGAAGAGCtgctttctctccttctccccttctctctctcactctttttctctccttgtAATTTGGCCTCTCTAAAACTGCCTGGGTTCTTCAGTCACTCACTCTTTTCATTGGGGCTCAGGTTGATAACCAAGCGATTGCCCAGGCTGCctcttacttttttttcttactcCTCAGCTGGTCACTGGGGTAGGGTGTGGCCCCTGTAGAAGCTGGGCTTTAGCAGCTCAGTACTGTCAACACCACCGCCAGTTACACATTAAATAAGCGTGATTGCATGTGCATTAGATTGGTGGAGGAAGCCAGGCTGATTTCTGCAGATGTTTGTTGATGCAGTTATCAGGAGCTCAAGGCCATACATTTCCAAGAGGTTTCTTTTCCATCTGTCAGAGACAGTCTCATGACCTGGCCATGTTCATGAGAGATTGTGATAGCAACACGTTTATACCATCTGTttttgggttgttgtttttttaaatacattattatcttGCTTGTTACATattcttttatgttttgatgCCCCAAATCTATTCAGTTACTTCTGCTTTTGGTCCAGTACGATTTCAGATCTGAATGTTCTTTTTTGCTTCTTTAAAACAAGCTGCTCTGAGATCACTTGAGGGAGGAGCACTGTAGCGCTGTCTCTGTACTGTGCCATGCAGTTCTATTATTTTGGCTTCAGggtgagagaaacacagagttGGCCTTGTGGCGAAAATACTAACAAGACTAAGCACAGCTGAAAAGACCAGCACTTGGCAAAGTGTATTAGAGGGAACCGAGAATGGCTAATCTGAAAGGGGTTTAATTATGGTTGTAGAAAGATGAGAAATCCTTTGATGCATGCATATGAGTTCTTGAAGTGCCCTGCGGATCACTGATATCTGCATTTCCCCATGTCACATCCTCTTGTTCAGCCTTGATAAAAACACGCCACTCAGACCAGAGGATGGATCTGAATTTTACAAGATCCCAGTGTGTTAGCCTCTGCCGCGTGTCTTGGAAGTTTATTTCCTGCCTGAACTACAGTATATGAAAAGAGAATTTGCTAGTTAACAACCACCAAAGGTAATCGTGCCAGACACACGCAATAGGATATGTAATCGGTAAGAAATTAAAAGCAGATGATATAAATATCTCCCTTTAATTGTCACCGCATCGGCCCTATTCCCTAAGGGGTCGTGATTCTCCTCCCTGTGTGAAGGTCACTGGATGTGAGACTGAGTCTGGCTGGGGTTTGGCTTGGTAATCGCTAAGCAGCATTATATATTTGTCACTGTTTCAAAGACATGAATTAATTGCCAGGACTCTTGGGTTCAGTATACGTTTTTCCTCTTGTCAGCATTTaagtctttttaatttttgtttccaATTGAACGATTAACTATAACTCCCCGCTCCCTCCTTCCCAGTTTCTGCAACCaaagaaatatttcaaaattatggCACGAGATGAAACCGTTTCTTCCTCGATAATGTGCAGAACTCAGACGCGCTGCTCTGTGTATGCGTGATTATGTGTAACTTGGCCAGAAATCAGTGGCTGTAGCGGAAAACATTTTGTGAAGGGCACATCTTGAAGCTCAGATCATGAGTGAAGGATAAGTCCCTACAATAAACCTGTGTAGAAATAACTACTGATCATTTGAATGATGGTGACACAATTTACAAGGGTCCTTATACTCTGTTTCAGTAACACCAAAGAAAAAACCAACAGGAAGGAAATAGTgctagctttttttttgtttgtttgctttttttagtCGATAGCAGTCTCTGTGTACTTCGTTAGCCTGAACATTACTGACAGACAAAATACCTATGCAAACCTCTATGCAAGGAAGTACATAGCTGTTGCATGGATACTGTACTCTGTATGCTGATGCCAAAATGacaggaacaaaataataaaaaaaagattcgGCGTTCCGAGTGTGAGAAGATTTGCTGTCTTTCTGCAAATAATTATGCAGCATCACATCCAAATCCCTAATCTGCTCGAGCCTCAGTTCCTTCCCCAAAGTATTTTGTTGTCTTTGGATCCTGCCAGCTGTCGGCGCAGCTTTATTGTGAGCTTCCAAAGTATCGTTTTGCTTTATTGGTTCAGTTTTATTCCTGTGCCTTCTAATACAAAAGCTGCCACCattcaaatagaaaatatttttttccatgggGTCTTCTGTTGTTTCTGTTGCTTTATTCACTAAGGCATATTTCACTTTTTGACTGAAAATAATCTTATCTGGGAAGCTtgagaaaatatacaaatattgtgGATCTACAATCTCAATTGATGATGTTCATTAATCAATAAtccaatttcctttttttatttttacttctgaCACATACTGTGTAGGGAAGTGTCTTAATAtgtctaaaatacaaatacatgccacttttgtgatttatttgaaCTGTGATAATCTTGCATTTCATTAGTATTGTTTTCAATGTGATAAATCTGCATTTCGTTACATTTTACTCagtaagatttatttttgtttaatttttatttgtatgttttcagtaGCCTCATGAGACATTTCCCTGTTATCTTGTGTAAACTACTGTAGAAGTATAATTGTTAGGTATACTGTAAAATCAATATGGGTAATTACCATTTGACATTAGTACAAAAATGATGGGCATTTCTTTTGAGGTGAAAGTATTACTGTTGCCTGCTGTCTTTTCAAAGTTACTGTTCCTTTTTTCCAAACATATATCTCATATTCCAGCTTTTAAACATCATGAAAAAGATCTTCAGACTGTTGTGGCTCATACCAATGTTACTTATTGGAGTTTTACTCCTTTTATGAACATGTAGAAAACTGACCTATATTTGCAAGAATTGAAAggagtatttttcttttctatagCACCTCTTAACAGTCCCTAAACAAACCAATTATCCACTGAAATGCATCTGTCTTTGTGCTAATGCTAATGACTAGGGCTTAAATTGCACACTTCActtcagtatatagtgtgtttctgtgtccaGGGGCAGATGCATAGCTTAGCTTTCCTCTCtctaatttaactttaaaaggCAACATAtgttgttctgtgtttgttAAGTTCGTTAAGTTTTGTAAGTCCTCATGACAGTTGCAAGAAACATCCAAGTATGTCCTGTAAGCAGGCTGTGAGATAATGCAGTGTGAGAGGGTGTGACTGCTTACCTATTGTCCACCAGAATGATCACATCAAGATGTTGTGATAACATCTGCTTTAATGAGGATTACTACAGTACAAGTGGCAGAAGGTGCTTGAATAATTTAACTGGAAGTGACAGAAGATGTTACATGGCAGTGCAACAGTGTGGGTGGTTAAGTGAAACAGCCTCTCCATGTTTGTACATTAACCACGTTAGCTGCAAAAGACAATGTGGTTATTCAGTGAGGCATGTTCAGCTAAATTCCCAAAGGTTGTGTGGTTTTCTGCACTGTTTTATTCTCCAGATCCTCAGTGATTAATGATAAACTTCATTGTttgtctcagtcagtcagtgagtttCCACTGTTTTGTAATGACAAAGTCTGCCACTTACTACAAGCATTTCAAAATTTCCAAAGGTAGCATTGTTTGATGAATAACCAAATAATGTGGCATGAGTTACTCAGTGGATTGTATGACTTGGCATTCCAGCTATTGGGCAATACTGCCATCTGCTGGAATGggaatgtaatttttattttatttcagttatcaGCTGTTGAATATCAATTGTTTGGAGTCTGggataaaatcattttaatgaaaactatgTGATTTTGGggatatgtttcttttttcagcCATGCTGGGGGTGAACTGATTTGtcatatttgtttgaaatgtcttaataaactgtttacaatgtttagaatccatttcattaaaataatccaaTCATTTGACTGGGATACAAAGCATTGCTTAAAACTGGAGTCCCCTATTATTTCTTGTACATAGAAGGCAGTACAATCATTGTCTAATTTTCTGTGTTTAcccagtcagtgtgtgagcGCCCCCATGTGTGTGAATTACTGTTGCAAAATGTCTTCTGCAGTGCC

Function

symbol description
gnmt Predicted to enable cation binding activity; glycine N-methyltransferase activity; and identical protein binding activity. Predicted to be involved in several processes, including alpha-amino acid metabolic process; protein homotetramerization; and regulation of gluconeogenesis. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Is expressed in spinal cord. Human ortholog(s) of this gene implicated in glycine N-methyltransferase deficiency. Orthologous to human GNMT (glycine N-methyltransferase).

NR:

description
PREDICTED: glycine N-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0017174 glycine N-methyltransferase activity molecular_function

KEGG:

id description
K00552 GNMT; glycine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004092 True 5114 mRNA 0.42 6 32937405 32946916

Neighbor

gene id symbol gene type direction distance location
AMCG00004093 NA coding upstream 36735 32876810 ~ 32900670 (+)
AMCG00004088 NA coding upstream 92755 32838964 ~ 32844650 (+)
AMCG00004089 NA coding upstream 100724 32814743 ~ 32836681 (+)
AMCG00004087 kif6 coding upstream 162593 32728660 ~ 32774812 (+)
AMCG00004085 NA coding upstream 336813 32598453 ~ 32600592 (+)
AMCG00004099 NA coding downstream 185439 33132355 ~ 33135491 (+)
AMCG00004101 NA coding downstream 190720 33137636 ~ 33142538 (+)
AMCG00004100 osr1 coding downstream 294116 33241032 ~ 33247564 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding downstream 488834 33435750 ~ 33452672 (+)
AMCG00004109 NA coding downstream 614108 33561024 ~ 33565863 (+)
G5569 NA non-coding upstream 325354 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 549870 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 553726 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 587302 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 627493 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 491412 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 526120 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 527926 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 619257 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 650976 33597892 ~ 33600011 (+)
AMCG00004079 NA other upstream 535022 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2042578 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2630230 30296867 ~ 30307175 (+)
G5245 NA other upstream 2665881 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 3396047 29527414 ~ 29541358 (+)
G5642 NA other downstream 183204 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 1905947 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2805534 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3080363 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3314872 36261788 ~ 36278234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012396 gnmt coding NC_007128.7 CM002901.2 48920799 ~ 48936123 (-)
grasscarp (Ctenopharyngodon idella) CI01000311_00368494_00376259 GNMT coding CI01000311 null 368494 ~ 376345 (-)