AMCG00004093


Basic Information

Item Value
gene id AMCG00004093
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32876810 ~ 32900670 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004093
ATGGTGGACAAGGGTCCTTTGCTGACGTCAGCCATCATCTTTTACCTGTCTATCGGGGCGGCAATATTTCAGGTCCTGGAAGAGCCCAACTGGAAGGATGCTGTCAAAAACTATGAAAACCGGAAGGCACAGATACTTCAACAATATCCCTGTCTCACGAAAGGCGACTTGGACAGAATTTTGGAGAGGGGCACTGGCCAAGATCAACACAGCTGTGCCCTGTATGAAAATGATCAGAATGTGTTCAAGCAGCTGGTGTCCGGGATCCAGAGCAACTGCAGTTGGGTTTGGGGATTCTTCGTGGTGTCAGATGCTTCAGGACAGGGTGTCACCATCACAGGCAATAAGACCTTCAACAACTGGAACTGGCCCAACGCTGTCATTTTCTCTGCTACCGTCATAACCACTATAGGTTATGGAAACATTGCCCCCAAGACGTCTCCGGGCAGGGTCTTCTGCATCTTCTATGGGCTGTTTGGGGTCCCACTGTGTCTCACCTGGATCAGCGCCCTCGGCAAGTTTTTTGGAGGAAGAGCCAAACGCCTAGGTCAATTCTTAACCAAGAGAGGAGTCACCTTGAGGAAAGCACAGTTCACCTGCACTGCCATATTCCTGCTGTGGGGGGTGGTGGTACACCTTGTCATCCCACCCTTTGTGTTCATGAAGCTGGAGGGCTGGTCCTACATTGAGGGGCTGTACTTCTCCTTTTTGATTAAAAGGGTACACCCAGATGAAAACTACCCAGTCCTTTACCGCTACTTTGTGGAGCTCTGGATCTACTTGGGTCTGGCCTGGCTTTCGCTGTTCTTCAATTGGAAGGTACGCATGTTTGTGGAGGCACACAAAGCTCTAAAGAAGAGAAGGAAACGACGCAAAGAGTCATTGGAGGATGTTCATAACTACAAAGAGGACAAGAAGGCCCTGCGGCTGGAGCACACAGCCAATGATGTCAACATCTTCAACTTCCTCTCCAAGAAAGAGGAAGGTTATAATGACCTCATCAAGCAGATAGCACCTAAGAAAGTTGGAACGCCAGCTGCAACCAGTGGCCGCAGCAAAAGCTGCAGCGACCATGACAGCGTTCACAAAATCCTGAGGTTGGACCACTCCCCTCGCCAGTGCCGGAGGTACAGCTTCAGTGACAGGGTGATGTTCTCTAAAATGGGCTTCCTGAGGAAAGACGAGAATGGGGAGCTACTGACGAAcctgagagagaaggaggacaTGGAAATGCAGGATCTGTCCTATGAGAACCAGCTGGACAAGGACTGTGGAGAAGAGGGGCACAAGTGGGACTCCAAGGAGTACCAGGCGCTTATCTTCCAGAATGCTAACATCACCTTCATTGACGAGGAGAACCTGATGAATGATGACACAAAAACCAAGATCTCCACAGACGAGAACGCAGAGTCCGAGTCAGAGTCCAAGGAGGAGAGTACCTCGGAGACTGAGGAGTCTGTGTTTACCATAGACGGCTCTGACCGCTCGCTCTCCTATGAACGGCTGGTGGAGGAATACTCCAAAGTGGACAACATTGACGGCCTCAAGTGAGCTCATTGACCGTTTAAGTTTTAATCACTTATTCAGATTTTAGTTttcaatataacatttatactGACTTCAAGAAGAGCCAGTGTTTTCTTAAAGGAACCCTAGTATAAATCTTGCTTGTCATTGATGCAAGAAAATACTTCTATTGAATGGAAAAAACACTGAACTAGTGGCGTCGCAACTCCAGCACTTGTATTGCACAAAGTGTTTGAGATCAACATGCAGAAGGATCTTTTTCTTAATATGCCACTCGCCACTTTGGGCCAAGTTGAACAAAGCTTTCTGAATCCCATAAAAGACCATGTCTGTTCAGCATTGCTCCTATGCTAGTTGGTTATATGGACTGGATGATATAAAGAACTGGAATGGTTGATCAACAATCTTTTTATCCTCTTCCAAtctaaacattttgatttttttactTCTGTTGTCCAATGTCTTCCACTGAGTGTTCAAAAGCAGAAATGCTTAAGAGTGTTAAATCCAACATATCAAGCTTAATTGTGGACCTTTTGGAGAGGACAAGCCAAGTCGTCTGTAACTTACATGTAGGATTCGCCAAGAAAGCTTCTACAAATGGGAAATATCAGCCATGTTCCAGTGTCCAGATTTACTTTCACCATATTGGTGTTTTttgtcaaatgtaattttatgaaAGAATTGCTGTCCTTTTTGCTATAATGTGCAGGCCATTAATCTTTGCTGCACCCAAGCTTCTAGTCCAGTGTCTATCCAGTGGAACTCTTATTCCAACACTAGTCAGTGTATGAGACAATTAGTAATGGTAGTCCTCATTTTAAGGGGGACACATTCTAACATTCCCCACCATGTTCAATATGTCACCAATCTGCAGGCAGATTCTAGATCGTTCCAATTGTAATCTGTCTTTCAATGTAgagttgcattttattaatgtcCTGTGCCTCCTTTTAAATATTGActgctttgatttttttgtttttgttcttgttttcactCTATTTATAGACAAGTACCAGCAATTCCATATATGTTAAGATTTACATGTATGACCCCAAGGCTTGGCCTATTTTTGACAGTTTTAGAACCTTTGGCCTCATAAAATGCAGAGAAACAAACTAATGTTTTTAGAGGCTAGCGTCTTTGTGTGAATTTCCACAGGTGGATAAAAGTCTGACTTGCAATACTTTGGCATACAAAGCCATGCCAACTGTAAGAAGATGCAGAAGTCTCTCCTCCTtttgtaaaagctttttttttttaaatacaataacataaatctatttattaaataaaacctaataAATACTGTAGTTCTTTTAAATCCTTTCCAACACCCTCACCCCTTTCTCAAGATATGAAACCCATGATGAGATGTGCTAGCATATGGGTAACATTTGTTCAGTATAATACTGAGCTTTATACTTGCCCCCTCTGagacaggaaaataattaaacactggGAAGAATAAACCATGCCCTCTCATCTCTCTAAGTGTAGGGGTTTGCTTGACTTTGTCTCATGGTGGCTCCAATGAAGTCTGAAGGTCATGACTCATAAACAAacagttatttttcattcattgcCTTTCCCACAGCTCCTACAAAAAGTGTTGCagagttgttttatttttttccagtatttttccaagattttattttgtctttaaacCTTGCCAGGcaagatttagtttttgtttctaaacacAAGCTGTAGactgccataaaaaaaaaagccacataACTTGCCCACCTGAAGTATTCGAGGTGAAACAATTGTTGTATTGGTTGTGTTTTCCTAGCCCATGGCTGCAGAGTTAAGCTTTCAACTTAGTAAATGTGCCTTGTGAATGTTCAGGAGTTGATTTCAGTAGTTTTTCCTTGTCATGGTTTAATTCATAGAAAGCCAAGGTTGAGCAAACTGCCCCATTGCCCTTCAGCTTATCATGGggttatgttttgtgtttctccGCCCCCCCCTCAGAACAATGTTGAGTATTTTGGTAGACTGCCTCCTCCCCCCCATTGTCTTTTGTCATAAGTTAATAAGGTTTGCTTTGCTGTTGACATTCAGCTCTGCCTACGTGTCCTGGTGGTTTTCTCACTTGCTGCAGACGTGGGCTGGGCAGTTGGCAACCTTCTCCGAGAAACTAAGCACATGTACTTCTGAAGTGTACAGTCTAGTATAGGAGGAATGCTGTTCTGAAAACTAATATCATGGCCAATAATGCACACCTTAAAATGCTGTTTGCACATTATTTtggatgtttatttaattgtggtGCTTGCTTCTAGTAGATGTGATTCACTGttcagtctttatttttgtattctttttagCAAGTATTTCAGCAAGTGGCAGCCTAGTAAAATGGACCTTTAATTTAAGTGAGTATTTTTAACACGTTTTAATGTgaattgtaacattttattttgtcctcttttgtttgaacaaaaaagaaaaacaaaagttgaaatTTACTGGTATGTTTCCAGTGCTACACTTTTGAGTCATTTGTAGGGGTCTACTATTAACACAGGCACATATGATATGGTACTGATATGCAAGGTAATGTTGGTTTGTTGGAAATCAAAATTCTAAGTATCTCACAAGAACTTTAATACCTTTATTGATAAATGAATTATATCCTCTGTAAGAGGATTACATTTTGACACATCAATATGTAGTAATACAATTTTCAGTGTGAACGTTTTTCATGTAAAGCACTAGCATAAAAGTCTGGAACAAAAAGAGTTTGAAGGCATCTTGACTGGCTGGAACCGAGCCATGGGAGTGTctttaaaagtgaataaatCCCTTTAGGAATCAGGGCTCTTAGGGAGGTTTTCAGGCTCTAAAGCAAATAAGTCATGAATGTTAAGGAGAACTTTGGGAGTTGTggaatgggggaaaaaaataaaatgtatgtataagaccttcaaaaatgtattgcattccCAAGACCCCAATAAAAGTGAAGCACAGAGAACATTGCCAGTGCTCTGTTTGCATTTACAGCATCGGCATTGAAGGCCTCTTTGGGCTGTGAATAATCTAAGCCTGCTCTAAAGTTATAAGCAATGGCATGGATAAATCTGACTACTTTCTTGAAGCTTGTTCACAGAGGAAACGCACATGGTGCACCTCCAAGGTTATGACTAGCCAAAGTATCTTCTCCAATCCTGAACCATTTGGGGCCCTACTCACACATACTTATAGATAGTGATTATATTTAGGGAAATGGCTTAATAAGGACAGCCTACTAAGAGGCAAACTTACAAAACTGAGCCAaaggttttagatttttttttaattattattattttatttttttatcttctgGGTATTTGGAGTGATTTTTATAGTATTTAAATTAACCATTATGGATGGTCACATCCAAAATATGAATTATCACTGAGCTTCATTATACAGCAATGTCTTGAAGGGGATCTTCAGGGTGAAGGCATGTGTCCATTTCCCAAGGTATGGGGTCATGAAAGCAGAGATCAGGCTGACAGTTCATAGATTTGTATCTACTTGTACTCCCCCATTTTAAATCCATCTGGTCTTCAATGTTTGgtgcttttttattaaaatagaaattgtGATAATGCAATGTGATCTTCATTGAACATGTCTCACTCCATTTCTGTAAACCTTACTCCAGCataatgtttgtatatgtatatatgtgtcggtaaattatttatcattggaaaactgttttgtacagaacaaaTGAAATTGTCAAGTGtgcataatatatttgttttaaataaac

Function

GO: NA

KEGG:

id description
K04916 KCNK5, K2P5.1; potassium channel subfamily K member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004093 True 5311 mRNA 0.40 7 32876810 32900670

Neighbor

gene id symbol gene type direction distance location
AMCG00004088 NA coding upstream 32160 32838964 ~ 32844650 (+)
AMCG00004089 NA coding upstream 40129 32814743 ~ 32836681 (+)
AMCG00004087 kif6 coding upstream 101998 32728660 ~ 32774812 (+)
AMCG00004085 NA coding upstream 276218 32598453 ~ 32600592 (+)
AMCG00004084 mocs1 coding upstream 280409 32583540 ~ 32596401 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding downstream 36735 32937405 ~ 32946916 (+)
AMCG00004099 NA coding downstream 231685 33132355 ~ 33135491 (+)
AMCG00004101 NA coding downstream 236966 33137636 ~ 33142538 (+)
AMCG00004100 osr1 coding downstream 340362 33241032 ~ 33247564 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding downstream 535080 33435750 ~ 33452672 (+)
G5569 NA non-coding upstream 264759 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 489275 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 493131 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 526707 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 566898 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 537658 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 572366 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 574172 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 665503 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 697222 33597892 ~ 33600011 (+)
AMCG00004079 NA other upstream 474427 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1981983 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2569635 30296867 ~ 30307175 (+)
G5245 NA other upstream 2605286 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 3335452 29527414 ~ 29541358 (+)
G5642 NA other downstream 229450 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 1952193 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2851780 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3126609 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3361118 36261788 ~ 36278234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G92609 NA non-coding CM030131.1 CM030131.1 19613241 ~ 19617787 (-)
tiger barb (Puntius tetrazona) G78072 NA non-coding NC_056709.1 CM032078.1 338836 ~ 339676 (+)
mexican tetra (Astyanax mexicanus) G85782 kcnk5,LOC107571180 non-coding NC_035905.1 CM008308.1 34726545 ~ 34729144 (-)