AMCG00004096 (syt14,syt14a,LOC101484328,LOC107548616)


Basic Information

Item Value
gene id AMCG00004096
gene name syt14,syt14a,LOC101484328,LOC107548616
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33014528 ~ 33022148 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004096
ATGTCTGCCCGTGGCTCAGCAGCCCAGCTCCCCAAATCGTACGAGCCAGAGCCTGCGGCCAAGTACGGCACTCTGGACGTGGTGTTTGACTACGACTCGGAGGAGCAACGGCTGCTGGTTACGGTGACGGCCGTGACAGACATCCCTGCCCTGAAGAGGACTGGGAACATCTCCTGGCAGGTCCACCTGGTCCTGCTGCCCACCCGCAAACAGAGGGCCAAGACGGGCATCCAGAAGGGGCCCTGTCCCGTCTTCACAGAGACGTTTAAGTTCAGCCGCATTGAGTCGGAGATGATCGGGAACTACGCCGTGCGCTTCCGCCTCTACAGCGTGCGGCGCATGAAGAGGGAGAAGGTTCTGGGGGAGAAGGTGTTCTACCTCACCAAGCTCAACCTGCAGGGCAAGATGTCCGTGCCCGTGACCCTGGAGCCGTGCTGCAGCCTCACAGGCTGTGACTCTCAGATGAGTATCTCGGAGATGTCCTGCAGTGAGAGTGCCTTGTCCTTCCAGTCAGTGGGTCAGGGCTCCACGCCAGAGATCCTGGTGGGGCTCATCTACAACGCCACCACGGGACGGCTCTCCGTGGAAGTCATCAAGGGCAGCCACTTCAAAAACCTGGCAGCCAACAGACCACCCAATACGTATGTTAAGCTCACCTTGTTGAACTCAATGGGCCAAGAAATGTCCAAGTGCAAGACGTCCATCTGCCGGGGACAACCAAACCCCACCTACAAGGAGACTTTCATTTTCCAAGTTGCACTTTTCCAGCTGTCAGATGTGACTCTCATTCTCTCCGTTTACAACAAGCGGAGTATGAAACGCAAGGAGATGATCGGCTGGATCTCGCTGGGGCTCAACAGCTCAGGAGAGGAGGAGCTCAACCACTGGACAGAGATGAAGGAGTCCAAGGGACAACAAGTGTGTCGGTGGCACACGCTGTTAGAGTCCTAA

Function

symbol description
syt14a Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 11. Orthologous to human SYT14 (synaptotagmin 14).
syt14 Predicted to enable identical protein binding activity and phospholipid binding activity. Predicted to be integral component of membrane. Implicated in autosomal recessive spinocerebellar ataxia 11.

NR:

description
PREDICTED: synaptotagmin-14

GO: NA

KEGG:

id description
K19328 SYT14_16; synaptotagmin-14/16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004096 True 951 mRNA 0.57 3 33014528 33022148

Neighbor

gene id symbol gene type direction distance location
AMCG00004095 NA coding downstream 29024 32982463 ~ 32985504 (-)
AMCG00004094 NA coding downstream 39717 32963040 ~ 32974811 (-)
AMCG00004090 daam2 coding downstream 342657 32663664 ~ 32671871 (-)
AMCG00004091 daam2 coding downstream 363827 32613096 ~ 32650701 (-)
AMCG00004076 NA coding downstream 651402 32349953 ~ 32363126 (-)
AMCG00004098 NA coding upstream 28989 33051137 ~ 33106380 (-)
AMCG00004097 LOC104948289,LOC107579370 coding upstream 100444 33122592 ~ 33132313 (-)
AMCG00004103 NA coding upstream 532262 33554410 ~ 33556854 (-)
AMCG00004105 wdr35,LOC101483091 coding upstream 547162 33569310 ~ 33597389 (-)
AMCG00004106 NA coding upstream 577745 33599893 ~ 33607026 (-)
G5570 NA non-coding downstream 403184 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 467522 32545377 ~ 32547006 (-)
G5552 NA non-coding downstream 484690 32527683 ~ 32529838 (-)
G5539 NA non-coding downstream 622418 32391883 ~ 32392110 (-)
G5536 NA non-coding downstream 625559 32387746 ~ 32388969 (-)
G5645 NA non-coding upstream 82577 33104725 ~ 33105215 (-)
G5721 NA non-coding upstream 604161 33626309 ~ 33627507 (-)
G5805 NA non-coding upstream 1270121 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 1850465 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 1855352 34877500 ~ 34878219 (-)
G5566 NA other downstream 418121 32593627 ~ 32596407 (-)
G5540 NA other downstream 587965 32407802 ~ 32426563 (-)
G5502 NA other downstream 704618 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 2041032 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 2119704 30813781 ~ 30894824 (-)
AMCG00004102 NA other upstream 543938 33566086 ~ 33567325 (-)
AMCG00004116 NA other upstream 853293 33875441 ~ 33918321 (-)
AMCG00004120 NA other upstream 993220 34015368 ~ 34031547 (-)
G5801 NA other upstream 1109950 34132098 ~ 34135600 (-)
G5871 NA other upstream 1869753 34891901 ~ 34892613 (-)

Expression


Co-expression Network