AMCG00004099


Basic Information

Item Value
gene id AMCG00004099
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33132355 ~ 33135491 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004099
aaaacaacgaAGATTTAGGCCACAGTAGGGTGAAGTTCATTCGTAATAACATTtgatatatgtaaatacattatacaactatatttatttatataacacctatataaaatatataggttGTGTCTGTCCACCCCTTAGGTTGCAGATACAAGTCTTGTGTCTAGGTGAAAAAGACCAAAATAAGCTCTAAAATCAAGTAAACCCGAAGCAACCGTCGTCCATCTTGGTGAAGCGGCGCAGTCAGTACCTGAAGGAGAATATGCCCACGAGTTGCGCAGCATACGGCTGTACCAACATCAGGACCAGGCGCTGCGGAGTGAGCTTTCACAGGTTCCCGTTAAACAAGGAGAGGAGAGCTGCGTGGATCCGACGCGTGCGCAGAGTGGATTTCGTCCCCTCTCTCTACACCTTCCTCTGCTCGGACCATTTCGAGGCGTCCTGCTTCGACCGGACGGGCCAGACTGTCAGACTGAGAGAGGATGCCGTGCCTACGATCTTTAACTTCCCGgggcaaaaacataaaatgGTATCCAGTCCTCGAGAGACGGCCACCAGCCAGAAAGCAATGGCCCCCATTGAGGCCTCCACCCCGGCTTCCCCAGGGCAGCCTGTGCGCAGCCCTGATGTCTATGAAGACCACAGCTACTGTCTGGTCAGCCTCTCAGCTGCCAAGGAGAAGATCTTAGACCTGAAGGAGCAGCTGGAGGCAGCCAGAAAGAAGCTGAAAGCCAGCCAGCAGCGGGAGAGGCGGCTGGGCATGCGCTGGGCAGAGATGAAAGAGTTGGTGTCTTGCCTGAAGAGGAAGAAACTCATCCCATCAGGGCCACCCTTGGAAGTCATAGAGAGCACCTTGAGCAGCATGGATTTAAAAGTCCTGATGAAGGAGATGAAGGCTCAATCCAGGAGTGCTTACCACCGGTATTATAGCTTCGAGTCCATGCATTTCTGCCTGACATTGCACTTCCATGCCCCAGAGGCCTACAAGTATGTAGAGCAGCACCTTGACCTGCCCAGCCCCAGTGTGCTGAGAGAGTGGGCAGATACGGTCACTGAACCCCCTTTCACAGAGGAGGTGTTTGACTGGCTGAATGGCTACACCCTGCAGGGCATGGAGTTCTACCTGTGTGTCCATGGGGGGAAAATACAGGCTGACGAGGACTGGGACAGCTCCAATGAGGAGGACTTTGAAGCAGACAAGCCTCCTCAGAGTGCCCTGCAGGACTCCACTGCAAGTGAAGCTTTGGCATTGCTGCTGGTTGCTGTAAACGGAAACTTGAAGTTGCCCTTGGCATACGCCCTGAGCGCTGACTTATCAGGAAAGGCTTTAAAAGACTTAATTCACCTGTGCCTGGTGAAGCTCTATGACTTTGGGATCTCCATAAAGGAGATGACATTTGATGACATTTCTACTGACATCTTCAAAAGCAAAGTCCCCAAGGAAGAACTTTATACCTTACttttgaatttctttttttctcactCACGTGAAACTccactgtaaaatgtttacaaagtGTCCACAAGCTGTTTCTGAATTTTCACACACCATtgtgaaatacttatttatgtCTCTTAAACTTCAGATCAGGATAATATTGCTTTGGGAAAATTACTTTGTAAATTTAAGAGAACCTAAAAAATAACCTATTTTCAGTAGAGGAGGAGGAATGTTTCATATGTTCGGCTTTAATGTTAAACAGTTTAAGTTGTTgacaatttcagttttcaattcTCAGTTACaaattcttttaaatgtaatgttgaaTTAAGTCATACTGTATAATTATTAAGTTATACTCAATAGTGCATTATATCAGTATTTGATCAGGAGTGCTAGGATGTTGTTAAtgctgtttgcttgtttttcccacagagaaataaaaacaaagcttgTTGATTTTGCCTCCAGAGCAAtgattccccccacccccaccatctTTTCTATCCAATTATGTTAACCTCTTTATATCCTGTTTTGGAGACCAATTTGCTGTAACTGGACTtatctgtgaaaacaaaataaaacaaagtccCCA

Function

GO: NA

KEGG:

id description
K23204 THAP2; THAP domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004099 True 2036 mRNA 0.45 3 33132355 33135491

Neighbor

gene id symbol gene type direction distance location
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding upstream 185439 32937405 ~ 32946916 (+)
AMCG00004093 NA coding upstream 231685 32876810 ~ 32900670 (+)
AMCG00004088 NA coding upstream 287705 32838964 ~ 32844650 (+)
AMCG00004089 NA coding upstream 295674 32814743 ~ 32836681 (+)
AMCG00004087 kif6 coding upstream 357543 32728660 ~ 32774812 (+)
AMCG00004101 NA coding downstream 2145 33137636 ~ 33142538 (+)
AMCG00004100 osr1 coding downstream 105541 33241032 ~ 33247564 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding downstream 300259 33435750 ~ 33452672 (+)
AMCG00004109 NA coding downstream 425533 33561024 ~ 33565863 (+)
AMCG00004110 NA coding downstream 612418 33747909 ~ 33761457 (+)
G5569 NA non-coding upstream 520304 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 744820 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 748676 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 782252 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 822443 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 302837 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 337545 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 339351 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 430682 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 462401 33597892 ~ 33600011 (+)
G5642 NA other upstream 1169 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 729972 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2237528 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2825180 30296867 ~ 30307175 (+)
G5245 NA other upstream 2860831 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1717372 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2616959 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2891788 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3126297 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3552139 36687630 ~ 36697885 (+)

Expression


Co-expression Network