Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004100 |
| gene name | osr1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 33241032 ~ 33247564 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| osr1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in angioblast cell differentiation; negative regulation of transcription by RNA polymerase II; and pronephric nephron tubule development. Acts upstream of or within several processes, including nephron development; pectoral fin development; and regulation of nodal signaling pathway. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; germ ring; head; mesoderm; and vasculature. Orthologous to human OSR1 (odd-skipped related transcription factor 1). |
| description |
|---|
| PREDICTED: protein odd-skipped-related 1 |
| id | name | namespace |
|---|---|---|
| GO:0035775 | pronephric glomerulus morphogenesis | biological_process |
| GO:0035776 | pronephric proximal tubule development | biological_process |
| GO:0035777 | pronephric distal tubule development | biological_process |
| GO:0035778 | pronephric nephron tubule epithelial cell differentiation | biological_process |
| GO:0035779 | angioblast cell differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0048382 | mesendoderm development | biological_process |
| GO:0048389 | intermediate mesoderm development | biological_process |
| GO:0033339 | pectoral fin development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| K09215 | OSR, ODD; odd-skipped |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004100 | True | 1821 | mRNA | 0.43 | 3 | 33241032 | 33247564 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004101 | NA | coding | upstream | 98494 | 33137636 ~ 33142538 (+) |
| AMCG00004099 | NA | coding | upstream | 105541 | 33132355 ~ 33135491 (+) |
| AMCG00004092 | gnmt,LOC107748599,LOC107566124 | coding | upstream | 294116 | 32937405 ~ 32946916 (+) |
| AMCG00004093 | NA | coding | upstream | 340362 | 32876810 ~ 32900670 (+) |
| AMCG00004088 | NA | coding | upstream | 396382 | 32838964 ~ 32844650 (+) |
| AMCG00004108 | 5nt1a,LOC105899417,LOC102795473 | coding | downstream | 188186 | 33435750 ~ 33452672 (+) |
| AMCG00004109 | NA | coding | downstream | 313460 | 33561024 ~ 33565863 (+) |
| AMCG00004110 | NA | coding | downstream | 500345 | 33747909 ~ 33761457 (+) |
| AMCG00004113 | rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 | coding | downstream | 519482 | 33767046 ~ 33767636 (+) |
| AMCG00004115 | NA | coding | downstream | 657727 | 33905291 ~ 33912885 (+) |
| G5569 | NA | non-coding | upstream | 628981 | 32611833 ~ 32612051 (+) |
| G5529 | NA | non-coding | upstream | 853497 | 32384435 ~ 32387535 (+) |
| G5527 | NA | non-coding | upstream | 857353 | 32383409 ~ 32383679 (+) |
| G5522 | NA | non-coding | upstream | 890929 | 32348390 ~ 32350103 (+) |
| G5501 | NA | non-coding | upstream | 931120 | 32309505 ~ 32309912 (+) |
| G5662 | NA | non-coding | downstream | 190764 | 33438328 ~ 33445420 (+) |
| G5680 | NA | non-coding | downstream | 225472 | 33473036 ~ 33473330 (+) |
| G5681 | NA | non-coding | downstream | 227278 | 33474842 ~ 33475047 (+) |
| G5688 | NA | non-coding | downstream | 318609 | 33566173 ~ 33567479 (+) |
| G5707 | NA | non-coding | downstream | 350328 | 33597892 ~ 33600011 (+) |
| G5642 | NA | other | upstream | 109846 | 33130120 ~ 33131186 (+) |
| AMCG00004079 | NA | other | upstream | 838649 | 32400405 ~ 32402383 (+) |
| AMCG00004056 | ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 | other | upstream | 2346205 | 30887995 ~ 30894827 (+) |
| AMCG00004039 | NA | other | upstream | 2933857 | 30296867 ~ 30307175 (+) |
| G5245 | NA | other | upstream | 2969508 | 30271210 ~ 30271524 (+) |
| AMCG00004138 | fkbp1b | other | downstream | 1605299 | 34852863 ~ 34870320 (+) |
| AMCG00004158 | NA | other | downstream | 2504886 | 35752450 ~ 35766180 (+) |
| AMCG00004160 | LOC106571404,LOC106607809,LOC105897019 | other | downstream | 2779715 | 36027279 ~ 36045282 (+) |
| AMCG00004167 | NA | other | downstream | 3014224 | 36261788 ~ 36278234 (+) |
| AMCG00004179 | ptrhd1,LOC103399259 | other | downstream | 3440066 | 36687630 ~ 36697885 (+) |
