AMCG00004101


Basic Information

Item Value
gene id AMCG00004101
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33137636 ~ 33142538 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004101
GAAGCAATAGCGGCGAGCTTTGACTTTGGCTTCAAGGATGGCGTTTTGCCTGAGACTCGGCGTCGCATTGATAATGCTGTTATCAGAAGTTCGGATGCAAAGCCCAGGCACCATGAATACCACATGCTTAGGGAATTTAATGATCATGGATGTGGATTCCTCTCTTACTTGGGGAAACCACTTCATCTTTAATGTAATGGACCCAACTGGGAAGTTCATCCCACTGACCCCAGCACTTGCCACTCAGTGTGGATATAGCATTAGTGTTGATCACTGGGGAAATGTGAAGTTCATTGCGTCTGTGCTCAGCTGTTTTGCCGAAAACAATGCAAGTCTTTTCCCTCCCTTCTCcattggacttttttttttttctcccctgGTCTCTGTCCGACGTGGGGTCCCTCTTATTGAACCCAACTTTGTTCAGGATGCACCTGAGGACTGGTCTCTAGCTTTCCCTGAGGCAACTACTGCTGAAAATGATATCTGGCAGATTGTATTTCACCTCCCTAAGGAGAAGGCCATGACTGTCCATCAAGCGATGAGTGAAGGTTATGGTGTAAACACCACCTATTCCAGAATTGTGCTCCGAACCCCCTACAATACTTCAGAAAGCCAATCCCAACTGATCCAAGGTGTGCCTCTGTCTGTAGTCCGTTCAACCACTTTCTACAAGCAGAGATGGATGATCTTGATGGTTGATACTGCAGTGGCGTGCCCTATTGATGGCACCACCTTCACTGAAGAGATGATAACCTGGGCTGTTCCTCAGATTATAACTCCCCTTGTTCCAACCCTGCCAATATCAAATGTTGATGTCCAGTTGGGAGTTAATAATGAGATTCTTCTCCCTTCAACCATTATTGCCAGAAACTACAATCTTACTGTGGGTCCTAATGTGGTAATCGTTCAGTTTCCAGTGGGTGCTACTGGAGGCTACtataagAGTCATGTTATTCCTGATTCTGCACATGGAATATATGGCATAACTTACACCATTGATCCGTTCTTGGTCTACTCCTGGGAGGATGATACCTATGACAAGACAAAGTACACCCTCCTTCATCCCATTACTACACCGTTCATGCCAAGACCCCCACATGTTAACTACACTGTTCCAGATAATCAACGGTTCAATGTAACTCTGGGGACCTTCCTGCCTGATGTGGAGCTGGTGCAGATTACCTTTGTGACGGGAACCCTGACTATACCCTATATGGTTAACCTTTGGCACAATGTTCAAGAGCACATATTTCCAAATGGCTCAAAGGCTTACAATCTGCAAGTGCCCCTTGTTGACCcaaatgttgttgttgagGTCACTTCTCCTACTACTAGAAGATATACCCTGCCTCTGCTTTACCAGCTTGTAGTGTTACCAGAAAATGACACCTTTACACATCCAGCTCAGCCTGAAATCACCCTTCAGGATATTGTCCCACCTACTGTCACTGGATACTGTGACCTGGCCAACTTCTATGTTAATGCTACAAATGGGAACCTTGGCAAGAACTGGCTGCTTGTTGTGGGTACTAGAACTCTCACCCCTGCCATGGAAACTGAATACACATATCAGGAAACTGCCACCAGTGTCTTGATGACTGTACCATATAACTCTCCTGATGTTGTCTATGAACTGGTCAGCTCTTCAGAAATCCGTAGCAGACTTGACTTGGCTCTGAAGGACAGTGCAAAGCTGTGGATCTACACTAACTTCTCAATCTCCTGCAGCTTTCCCCTGAAAATGATTGAGTGCTACACTAATGGGACTATGACTGCTCTGGCTGTGAAGGTGGAGTCTGTACCTAGCCTGAATCCTTCCCAGCTAACTCTGAGGGATCCAAGCTGTAAGCCATCCCTGTCTACTGATGGCACTGCATTCTTCCATTTCAATGTTAACACCTGTCAAACTACCAGAAAGTTTGCCAGCAACATTATGACTTATGAAAATGAAGTACAGTGGACATCCCCTACCATCACCTACAGATTTGCCATTGCGTGTCACTACTACATTAATGACACTGAAGTGGTGTCCTTGGAACCAATGGACAATCCAGCACCAGTTGTGGAGCCAGTCTTGGGCATGATTACTGTGGTCATCAAGCTTGCCTTGGATGTCTCCTATAACAGCTTCTATGGATCCTCTGATTACCCAGTAGTAAAGTACCTGCAGGAACCATTGTATTTTGAGGTGGAACTCCTGAATCGCCAGGATCCTCAAGTTGAGTTGTTTCTGGAAAATTGCTGGGCTACTGCTTCAACTGACCGGGACCGCTCTCCACAGTGGGATATCATTATAGATAGTTGTGAGAACACTGAAGACTTGTACAAAACCATCTTCCACCCTGTTACTGCCAACCAAAGGGTCCTCTTCCCCTCCCACCTGAAGAGATTTGAAGTGAAAATGTTCACCTTCACCAATGAGCAAACTGTACTGGAAACTCCAATTTATGTCCACTGTGGTGTTGTGATCTGTGATGCTAACCAGCCATCTGATGGGGTGTGCAGAGGGCAGTGCATTCCTGGCAAGCAGAGATTTGGCCGCAGTGCAGACCGGAAAAACAGGGTGGTTGTATCTTCTGGTCCAATTGATGTTGGTGCAGGTTCTCATTCCTAAGGTTTCTGATCCCTTTTTCTGGCTGCTATTGGCATTCTTGACTGTATGAACATGTAAAGAATAAATCTTTAAACCCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004101 True 2696 mRNA 0.46 21 33137636 33142538

Neighbor

gene id symbol gene type direction distance location
AMCG00004099 NA coding upstream 2145 33132355 ~ 33135491 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding upstream 190720 32937405 ~ 32946916 (+)
AMCG00004093 NA coding upstream 236966 32876810 ~ 32900670 (+)
AMCG00004088 NA coding upstream 292986 32838964 ~ 32844650 (+)
AMCG00004089 NA coding upstream 300955 32814743 ~ 32836681 (+)
AMCG00004100 osr1 coding downstream 98494 33241032 ~ 33247564 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding downstream 293212 33435750 ~ 33452672 (+)
AMCG00004109 NA coding downstream 418486 33561024 ~ 33565863 (+)
AMCG00004110 NA coding downstream 605371 33747909 ~ 33761457 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding downstream 624508 33767046 ~ 33767636 (+)
G5569 NA non-coding upstream 525585 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 750101 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 753957 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 787533 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 827724 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 295790 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 330498 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 332304 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 423635 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 455354 33597892 ~ 33600011 (+)
G5642 NA other upstream 6450 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 735253 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2242809 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2830461 30296867 ~ 30307175 (+)
G5245 NA other upstream 2866112 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1710325 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2609912 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2884741 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3119250 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3545092 36687630 ~ 36697885 (+)

Expression


Co-expression Network