AMCG00004102


Basic Information

Item Value
gene id AMCG00004102
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33566086 ~ 33567325 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004102
CAGCGGCAGGCATGCGTCATACGTCATACACATGCGACTAGAGCAGGTATCCTTGATGACAAATACGGAAGCCGTGTTTCACTGCGGTGTTGTACTGCCAATAAATGGAAACGTCCGAGTTAAATATTCTTAAACGAGCCGATTCCGAATTGCaccaaaagcattttaaagaaGCGGAACATCTGTACACGCAGTTCATCGACTCGTGTGCGCGTAATAAGAGCGGTCGCGTTGATGAGGTTGCTGTTGCTTTTAACAACCGCGGACAGATCAAGTACCTGAGAGTGGATTTCTACGAAGCAATGGAAGATTACACGTCAGCAATCGAAACAAAGAGACAGTTCGACATTCCATATTACAACAGGGGGCTGATACGCTATAGACTAGGGTTTTATGAAGATGCAGAAAAAGACTTCAGGAAAGCACTGGAACTAAACCCTAGTTTTGAAGATGCCAAGCTCAGCTTAAAACAGACTTTAACAGACCAAGAACAAAAGATACAAAGAGGGTATTAAAGCCTAAAATTCCTTGGtcttgctaatccaagtttgtTCCACCTGAACATAATCCTATAGAACCACTACAGCCTCCCAGGAACTGATGAGTCAAGTGTCAACTTCAGTACATTACACCAGAAAGCAGAAGGGTATTTTGGAATTGAGCTCTTGCATCATTGCCAAGAACTAAGCAGGAGACCATTTAAAGGCAACTGCATATAAAGAGGCTATATTCCTGGCAATGTGAAGACGagcattaaatcaattttaagttACTCTTGCGTCAATTTAATAGTTGCAGTTAGGTCTTGAACAGCTTGTGTAACCAATATTTAATTACCC
>TU6983
AAGCAATGGGTGAGGGAGAGAATGGACAGCGGCAGGCATGCGTCATACGTCATACACATGCGACTAGAGCAGGAGCGGTCGCGTTGATGAGGTTGCTGTTGCTTTTAACAACCGCGGACAGATCAAGTACCTGAGAGTGGATTTCTACGAAGCAATGGAAGATTACACGTCAGCAATCGAAACAAAGAGACAGTTCGACATTCCATATTACAACAGGGGGCTGATACGCTATAGACTAGGGTTTTATGAAGATGCAGAAAAAGACTTCAGGAAAGCACTGGAACTAAACCCTAGTTTTGAAGATGCCAAGCTCAGCTTAAAACAGACTTTAACAGACCAAGAACAAAAGATACAAAGAGGGTATTAAAGCCTAAAATTCCTTGGtcttgctaatccaagtttgtTCCACCTGAACATAATCCTATAGAACCACTACAGCCTCCCAGGAACTGATGAGTCAAGTGTCAACTTCAGTACATTACACCAGAAAGCAGAAGGGTATTTTGGAATTGAGCTCTTGCATCATTGCCAAGAACTAAGCAGGAGACCATTTAAAGGCAACTGCATATAAAGAGGCTATATTCCTGGCAATGTGAAGACGagc

Function

GO: NA

KEGG:

id description
K24946 TTC32; tetratricopeptide repeat protein 32

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004102 True 839 mRNA 0.42 3 33566086 33567299
TU6983 False 604 lncRNA 0.44 3 33566173 33567325

Neighbor

gene id symbol gene type direction distance location
AMCG00004103 NA coding downstream 9232 33554410 ~ 33556854 (-)
AMCG00004097 LOC104948289,LOC107579370 coding downstream 433773 33122592 ~ 33132313 (-)
AMCG00004098 NA coding downstream 459706 33051137 ~ 33106380 (-)
AMCG00004096 syt14,syt14a,LOC101484328,LOC107548616 coding downstream 543938 33014528 ~ 33022148 (-)
AMCG00004095 NA coding downstream 580582 32982463 ~ 32985504 (-)
AMCG00004105 wdr35,LOC101483091 coding upstream 1985 33569310 ~ 33597389 (-)
AMCG00004106 NA coding upstream 32568 33599893 ~ 33607026 (-)
AMCG00004107 laptm4a,LOC107743288,LOC107726758,LOC107678852,LOC107603102 coding upstream 44271 33611596 ~ 33624593 (-)
AMCG00004104 NA coding upstream 65649 33632974 ~ 33645712 (-)
AMCG00004112 NA coding upstream 120629 33687954 ~ 33689966 (-)
G5645 NA non-coding downstream 460871 33104725 ~ 33105215 (-)
G5570 NA non-coding downstream 954742 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 1019080 32545377 ~ 32547006 (-)
G5552 NA non-coding downstream 1036248 32527683 ~ 32529838 (-)
G5539 NA non-coding downstream 1173976 32391883 ~ 32392110 (-)
G5721 NA non-coding upstream 58984 33626309 ~ 33627507 (-)
G5805 NA non-coding upstream 724944 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 1305288 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 1310175 34877500 ~ 34878219 (-)
G5929 mut non-coding upstream 1336041 34903366 ~ 34906973 (-)
G5566 NA other downstream 969679 32593627 ~ 32596407 (-)
G5540 NA other downstream 1139523 32407802 ~ 32426563 (-)
G5502 NA other downstream 1256176 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 2592590 30969679 ~ 30973496 (-)
AMCG00004052 NA other downstream 2671262 30813781 ~ 30894824 (-)
AMCG00004116 NA other upstream 308116 33875441 ~ 33918321 (-)
AMCG00004120 NA other upstream 448043 34015368 ~ 34031547 (-)
G5801 NA other upstream 564773 34132098 ~ 34135600 (-)
G5871 NA other upstream 1324576 34891901 ~ 34892613 (-)
AMCG00004132 NA other upstream 1387381 34954706 ~ 34963885 (-)

Expression


Co-expression Network