AMCG00004108 (5nt1a,LOC105899417,LOC102795473)


Basic Information

Item Value
gene id AMCG00004108
gene name 5nt1a,LOC105899417,LOC102795473
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33435750 ~ 33452672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004108
GTATTGCAGCCGCTACAATGTTCACTCCTGATAAAGAAATCCAGCTCTGTGACCACCAGTTGCGTGTGGCCTTCGACGGTGATGCAGTTCTGTTCTCTGATGAGTCAGAGATCATAGTAAAGGAGCACGGCCTGGATTCTTTCTTTGAACACGAGAAAGCCTTCGAGAACAAGCCCCTTGCACAGCCCAAACCCCAGCATGCTGTTACTATCGCAGTGTCCTCCCGAACATTATTCAATATGGACAAAGAAAGGAAACTGTACGAAGAAGAGGGGGTAGAGAAATACGTGCAATACCAAGAGCAGCACGAAGATGAGCCGCTGATGCCGGGAGCGTCGCTGCCGTTTGTGAAGgcCTTAATGACTGTTAATGCCCGTCTGCGGGAACTGTACCCGGACAGTGAAGAGTTGTTTGATATTGTTCTGATGACTAACAACCACGCCCAGGTTGGGGTTCGCCTCATTAACAGCATCAATCATTACGGTTTAACAATTGAAAGATTCTGTATGACTGGTGGAAAAAGCCCTATTGGATATCTGAAGGCCTACCTTACCAACCTCTACCTCTCTAAGGACTCTGAAAAAGTGAAGGAGGCGATTGAAGAAGGTATTGCAGCCGCTACAATGTTCACTCCTGATAAAGAAATCCAGCTCTGTGACCACCAGTTGCGTGTGGCCTTCGACGGTGATGCAGTTCTGTTCTCTGATGAGTCAGAGATCATAGTAAAGGAGCACGGCCTGGATTCTTTCTTTGAACACGAGAAAGCCTTCGAGAACAAGCCCCTTGCACAGGGGCCTCTGAAGTGCTTTTTAGAGGCACTGGGAAAACTGCAGCGAAAGTTTTACGCCAAGAACGAGCGGATGAACTGCCCCATCCGCACCTACCTGGTAACCGCCCGAAGTGCTGCCAGCTCTGGGGCTCGAGTGCTGAAGACCCTGAGGAGCTGGGGCCTGGAGATCGACGAGGCCCTCTTCCTTGCCGGGGCACCGAAAGGCCCACTGCTGCATAAAATCCGCCCCCACATCTTCTTCGATGACCAGATGTTCCATGTTGAGGGTGCCCAGGAATTGGGCACCATTGCTGCACACGTGCCTTATGGAGTAGGACAGAAGTACCACAAGAGCAAACTCATAGAGCCGACCCCCAAAAATGCGAGGTCCTCCGTCTGGATGTCAGCAGCGGTGGTGCTGGCCGCTGTTTTCGGCGGAGGGGTGCTACTCTTCGCTCGCCGGTTCTTCTCCAGGCGGTCCGCTGTCCAAACACTACGTTATTCGACTGGGATGATGCGGGGGAAGACTATAATCGTGACCGGGGCCAACAGCGGCCTCGGCAAGGCCACAGCCGCGGAGCTGGTTAAGCTGCAGGCCCGTGTTATCCTGGCCTGTCGAGACCAGCAGAGGGCCGAAGCGGCGGCGCAGGAGATCCGCGACGAGGCCGGCCCGGAGCAGGGAGAGCTGGTAATCAAGCAGCTAGACCTCGCATCATTGAAGTCAGTGCACAACTTCTGTGAGGAGATCATCAAGGAAGAGCCGAGGTTAGATGTCCTCATCAACAATGCTGGAGTGTACCAGTGTCCATACACCAAAACCGAGGATGGCTTTGAGATGCAGTTTGGCGTCAACCATCTGGGCCATTTTCTTCTCACACACCTCCTCCTGGATCTGCTGAAGAAGTCTGCCCCCAGCCGGATTGTCGTGGTGTCCTCCAAGCTCTACAAATATGGAGAAATTAACTTTGATGACTTGAGCAGTGAGCAGAATTATAATAAAAGCTTTGCTTATAGCAGGAGTAAGCTTGCCAACTTGCTCTTCACCCATGAACTGGCTAAACGCTTGGAAGAAACAGGAGTGACTGTAAATTCTTTAACCCCAGGAATAGTTCGAACAAATCTGGGGAGGCACATTAACATTCCTCTTCTTGCCAAGCCTGTGTTCAATCTAGTGTCTTGGGCTTTCTTTAAAACCCCCTTGGAAGGTGCGCAGTCCTCCATTTACTTAGCCTGTTCTCCAGATGTAGAGGGGGTGTCCGGGAAGTGCTTTGCCAATTGCAAGGAGGAGGAATTGCTGTCGAAGGCAACTGATGATGCAGTCGCAAAAAAGTTGTGGGACATTAGTGAAGTGATGGTGCAACTGACAAAgtaaagcagaaaaacaatctTTAAGAGGTAATTCTTTACTACTGTAGTTAATCAAGTCAAGGCGATTAAAGTTATATTTCAGTGAagtatatagaaaataaagaaaatctacaGGATTATCCATAAACTCTATTGCAGTAAAGTGTACGATATACTTCGCAGCTTCAAGTAATGTTGAACAAAGATATACAGAAAAGCTGTTCTTTTTGAATTTGCCTACATCACTTAACACTTGGTGTATAGTTTCTTAAAGATGGTCATGTTCATTGATTTGACTGTCCACTGCAGATCCTGCTGCATGCCCTTTGTACACTATAAATGTGGGTTTTAGAGAAGTGAAATggaatatttacaaaacaattgtcCACACtggtaattacattttaacgcagtgtattttttttattatttttttcaaatataataaatgtatttctttgcagatgcccttatccgaGGTGACTTACCGGTTACATGAGCATTTAATTTGATAAGCAAGGATACATTTAGTTtggatttgaaatggaaatgtgtaGTGTTGCTTTCAtatagtttttaatgcactgccTTATTCTATGCTTTGCTGAAATGATTAGATTGAGTCTAGTGAtctattaaaattgattttgaaatgtttgttttatatattttttaatttgtatttgtgggaggggaggggtgctattacaaaaaaaaaatcacatgtgAAAC

Function

NR:

description
PREDICTED: cytosolic 5'-nucleotidase 1A-like

GO:

id name namespace
GO:0009117 nucleotide metabolic process biological_process
GO:0016311 dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0008253 5'-nucleotidase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01081 E3.1.3.5; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004108 True 2848 mRNA 0.46 8 33435750 33452672

Neighbor

gene id symbol gene type direction distance location
AMCG00004100 osr1 coding upstream 188186 33241032 ~ 33247564 (+)
AMCG00004101 NA coding upstream 293212 33137636 ~ 33142538 (+)
AMCG00004099 NA coding upstream 300259 33132355 ~ 33135491 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding upstream 488834 32937405 ~ 32946916 (+)
AMCG00004093 NA coding upstream 535080 32876810 ~ 32900670 (+)
AMCG00004109 NA coding downstream 108352 33561024 ~ 33565863 (+)
AMCG00004110 NA coding downstream 295237 33747909 ~ 33761457 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding downstream 314374 33767046 ~ 33767636 (+)
AMCG00004115 NA coding downstream 452619 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 666899 34119571 ~ 34130023 (+)
G5569 NA non-coding upstream 823699 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 1048215 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 1052071 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 1085647 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 1125838 32309505 ~ 32309912 (+)
G5680 NA non-coding downstream 20364 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 22170 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 113501 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 145220 33597892 ~ 33600011 (+)
G5720 NA non-coding downstream 173695 33626367 ~ 33627507 (+)
G5642 NA other upstream 304564 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1033367 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2540923 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3128575 30296867 ~ 30307175 (+)
G5245 NA other upstream 3164226 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1400191 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2299778 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2574607 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2809116 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3234958 36687630 ~ 36697885 (+)

Expression


Co-expression Network