AMCG00004109


Basic Information

Item Value
gene id AMCG00004109
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33561024 ~ 33565863 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004109
AAAGGACTCACAGAAACCAAGCGCAGCCATTGACTTGGTCTTCCGTTTTCTTTTACGGCGGAGTCTGCATTGTGCTTTTCGTGGCTGTTTGGCTATTTTAGGGATCGAAGCCAATCCCTGCATCGCGTGTCACGATGGGCCAATTTCTTCAATTTGGACTTGGATTGCTCCTGATCATGATGACTGGAGTCCGGACTCAGCTCACGATTGCGGACGCCCTGACATCGGAGTGCTTGGAGAATGTCATGGCGATTAAACTGGACAGAGCTCTGATCTGGAAGCACTATCTCCAGATCGATGCCTTGAATGATACTGAAGCCATTCTCATCACCCCTGAAGTAGCATCACAGTGTGGCTTCAGCTTGACCTATGATGACTGGGGGAATGTCCAATTCTTTGCCTCTGTTCTGAACTGCTATTCTAAAAACCAGGATGATGAAACATTCAATTTAACAGTGAGAATCAGAGTGTCTCCCAACATGGATATGTCTGACGCATTGGTGTACAACCACTCCATGGCCTGTACTTACACTCCATGGGCAGCAAGAGAAATCCTTTGTGAAAGAAACTACATGGAGGTGTCTGTCAGGAGGAGTGTTCCTGGTATTAAACAGAAGCCTGAGGATGACTGGCCTGAAGCATTTCTGGAGGCTGTGTCTGCTGCTTACAGAATCTGGAAAGTGGTCTTCTACCTGCCTGTGCAGAAGACCATGACTGCTAGTGAGGCAATAGAAAGTGGCTATGGATTAAACACAACACCCTCAAGACTTGTGCTCCGATCTGCTTACAACACCTCAGAAAGCCAGATAAATATGATGAATTCTGTCTCAATGTCTGTAATTAGAGCAACCACATTCTATAAGCAGAAGTGGATGGTCATGCTGGTGGACTCTGCAGTTGCATGTCCAACTGATGGAACCTCCTTCACTGAAGACATGATCACTTGGACTGTCCCACGTGTCATTGATCCCCTTGTAACCTCCCAGCCCTTCAAGAGCCTTGACCTTGCCTTGGGAGTTGATGGCAAGAAGCTAGACCCTGAGACCATCAGAGCACGAGATTACAGAGTGGATGTTAACCCAGATGTTATCACTGTTCAGTTCCCAGTGGGTGCAGCTGGTGGCTATTACAAGAGCTATGTGAAGGACAATGTGTATGGCATTATTTACAAAATTGAGCCCATGTTGGAGCATACATGGAAAGATGATGTGTATGatgaaaccaaatacaaaatcttGTATCCCATTGCCACACCATTCATGCCCAGACCACCTTTTACCATCAACAACACTGTACCAGCAGATCGTGTATTCAATGTGACCCTGGGCACCTTCTTGTATGATGTGGAGCTTGTGAACATCACCTTTGGTAATGAGACTATTCCAGTGTCTGAAGCCAACCAGAGGGGTTATAATGTTCAGGAGCACACCTTTCCCAATGGCACAAAACAGTTTTCTCTGCAAGTGCCATTCTCTGACCCTAATGTCCTGAAAGAGATCACCTCTCCAGATACCACAACCTACACCCTGAATGTGACCTATAACCTCAACATAATCCCTCAAGACACACCTTTTAACACCACTTCTACAGTTGAAGCTACCCTGAAAGACATCATTCCACCATCCATGACTGGCTACTGTGACCTGACCACCTTCCATGTTCTCATCAAATTTGGAAACCTAGGCCAGAATTTTATTATAACTGTGGGTGAAAGGCAACTGACCCCATCTATGGCTGATGATTATGTGGTTAAGTTCAACACCACCCACCTCTGGATGACTGTACCCTTCAACTCCTCTGATACAGTTTTTGAAGTAATCAAGTCTTCAGAGATCAGAAGCCGGCTTGACATGACTCTGCTGGATTCTAAGAAGTTCTGGGTCTACAcagacttctctctctcctgttgcTTCTCTGTCCCTCTAATTGACTGTTTTTCCAATGGAACCATGGCAGCCATTGCTGTGAGTGTGGAATCTGTAGCTGGTCTTGATCCTAAACTGTTAACTTTGAGGGATCCCAGTTGCAAACCTGTATGGAATGATGCAGTTTCTGCCATGTTTCAGTTCAGACTGAACACCTGTGGAACTACTAGAAAGTTTACCAATAACCTCATGACTTATGAAAATGAAGTCTTGATGACCACCTCCAATCCACAATATCgATTCCTAGTTGCCTGCCACTATCTGATCAATGACACCAAAGTGGTACAGCTGACTTCATATGATAACCCTGCACCTGTTGTTGAACCTGTGATGGGCAACCTGGAAGTTGTCATGAACCTTTCACTAGAGGCTATCTACAGTACCTTCTATAACACTTCAGACTACCCTGTTGTGAAGTTCTTGAGAGCCCCTCTCTATTTTGAGGTAGCGCTGCTCTATAGCAAGGACCCAGAAGTAGAACTGTTCCTAGAAAACTGCTGGTCTACAATTGGTGACAATCGGGACCACTTTCCAAAGTGGGACATCATTGTAGACAGCTGTGAGAACTCTGCAGATGCATACAAGACCATCTTCCACCCAGTCTCTGCAAACAAACGAGTGCAGTTCCCGTCCCACTTTAAAAGATTTGAAGTAAAGATGTTCTCATTCACTAAAGATACAGCTGCTCTCCAAAGCGAGATCTATTTCCACTGTGATGTTGTGATCTGTGATGCTAACAGTCCATCAGACAAGCTGTGCAAGGGACAGTGTATTCCAAATAAACAAAGGCTAGGGCGCAGTGTTGAGAGTGACAACCACAAGAGGGCACATGTGTCATCTGGTCTGATTCTTCTGAAAGCCTGAGACTCTGCTCCATTTATGAACCTGGTCTGACCTGGCTGTTGTAGGAATCCATGGTTGTCATTTGCTTTGCAGACTAAGTTCCAAAAT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004109 True 2876 mRNA 0.45 22 33561024 33565863

Neighbor

gene id symbol gene type direction distance location
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 108352 33435750 ~ 33452672 (+)
AMCG00004100 osr1 coding upstream 313460 33241032 ~ 33247564 (+)
AMCG00004101 NA coding upstream 418486 33137636 ~ 33142538 (+)
AMCG00004099 NA coding upstream 425533 33132355 ~ 33135491 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding upstream 614108 32937405 ~ 32946916 (+)
AMCG00004110 NA coding downstream 182046 33747909 ~ 33761457 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding downstream 201183 33767046 ~ 33767636 (+)
AMCG00004115 NA coding downstream 339428 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 553708 34119571 ~ 34130023 (+)
AMCG00004122 NA coding downstream 565263 34131126 ~ 34133612 (+)
G5681 NA non-coding upstream 85977 33474842 ~ 33475047 (+)
G5680 NA non-coding upstream 87694 33473036 ~ 33473330 (+)
G5662 NA non-coding upstream 115604 33438328 ~ 33445420 (+)
G5569 NA non-coding upstream 948973 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 1173489 32384435 ~ 32387535 (+)
G5688 NA non-coding downstream 310 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 32029 33597892 ~ 33600011 (+)
G5720 NA non-coding downstream 60504 33626367 ~ 33627507 (+)
G5731 NA non-coding downstream 119864 33685727 ~ 33768814 (+)
G5750 NA non-coding downstream 203726 33769589 ~ 33771848 (+)
G5642 NA other upstream 429838 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1158641 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2666197 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3253849 30296867 ~ 30307175 (+)
G5245 NA other upstream 3289500 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1287000 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2186587 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2461416 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2695925 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 3121767 36687630 ~ 36697885 (+)

Expression


Co-expression Network