AMCG00004110


Basic Information

Item Value
gene id AMCG00004110
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33747909 ~ 33761457 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004110
CTTGTCCTCTCCTGATGCCAAATACTGCTGTTACTTTCATATTCTCTGTTTTCTTAACAGAAGACAGGAACTCCTGAGTGGAGAAACGGGAGAAACTCAAGGAGTGAAAAGTCTGCCTCTGCAGAGACTCATGACAAGATGGAAAATCTCAGTCTGAAACGAGACCTGGGACTGCTCAATGCAGTATCCTTGATAGCTGGTACTATGATTGGTTCTGGGATCTTCATGAGCCCTCAGTGGGTTCTATACCACATTGGGAGCCCGGGAGCAAGCCTGCTGATCTGGGGAGCCTGTGGTGTCCTGGCTATGTTGGGTGCACTATGTTATGCGGAACTGGGGACAGTGATCACAGAGTCTGGTGGGGATTATATCTACATCTTACGGACCTCAGGACCACTTCTTGCCTTTCTCCTATCTTTCACTTCCATGATGGTGGTAAGACCAGCCAGCTATGCAGGTTTGGCCCTGAGTTTTGCAGAATATGCTGTGGCTCCTTTTTATCAGGGGTGCACCGCACCCCAGCTAATAGTAAAAATCGTGGCTGCTGTTTGTATTCTTGTGCTGGCAATCGTAAACACCCTCAGTGTGAGGTTTTCCATGTCTATTCAGATCTTCTTTTTGGTAGCCAAGGTGCTAGCACTGTTGGTGATAGTGATCGGAGGGGTAGTGATACTGTTCCTTGGAGGACACAGTGACAGCTTTCAGGATGCATTTCAAGACACAAAAGTGGGAATAAATCCAGTAGGAGCAGCTTTTTTTCAAGCTCTGTGGTCCTTCGAGGGGTGGAACAATCTGAATTATGTGACAGAAGAACTGAAAAGGCCTGAGGTTAATCTACATAGAGCATTGATAATTGCCATCCCCATGGTAACAGTGCTTTACCTTCTGGTGAATGTCAGCTACCTGGCAGTCATGACCCCGAGAGAACTGATGACATCAACTGCTGTGGCTGTCACATGGGGGAACAAAGTGCTAGGTAGCTGGGGTTGGCTGATGTCAGTGGCAGCGGCGATGTCTGCCTTCGGGTCTCTGAATGGGTCTTACTTTAGTGGGGGCCGCATGTGCTTTGTGGCAGCAAGGGAAGGCCACCTGCCAGAAATCCTGTCCATGGCGCATGTGCACCGTCTGACTCCTTCGCCTGCTCTCATCATCAACACAGCTATGGCTTTACTGGTGCTGATTCCTGGGGACTTTAACACTGTTATCAGCTTTTTCAGCTTCACTGTATGGGTCTTCTATGGGATAATATTCTCCAGCCTCCTTTACCTGAGGATTAAGAAACCGCACCTTCACAGACCTTACAAGGTCCCTATTGTCTTCCCGATCATCATGTTAATAGCTGCAGTGTTTCTGGTGCTTTCTCCAATCGTCGACAACCCTCAGATAGAATACCTGTATGTGATCCTCTTCATTGTCAGTGGGACTTTTATCTACATCCCTTTTGTACACTTCAAACTTTGCCCAGGGTTACTGACTAAAGCTACTTTGTTTTTACAGCTCCTTTTTGAGGTTGCTCCAGTtgacaaaaatgtgtaaatatccTATAGTCTGATgacacaaattacacacaggATTCATGACGATCACCCATTTTGCATCTTATCCTGTCCATAAAATATGACTGTAACAGTTGCTGTTAAATGGTGCTATGCAGCTCTGGGGTGGTAGGGGAGGCTGGGATGTAAAAAGATCCTCAAAACATTAGAGAGAAAGGAGTATCCATATATGgggcaaaattaaaacaacctATGACTTTATCCTGAGAGTTGTTTCTTTTGGCAATTTCTACCTCCAATCATggaggtatatatatatatatatatatatatatataacattttactgTATACCAAAGAAAAAGTGAACCTTAAGCAAGATAATCTTACATTTGTATAGACAAGAATTAAATccttaatgtttaatttcaaagtttcgtagtttatatatatatatatatatatatacatacactcacctaa

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13868 SLC7A9_15, BAT1; solute carrier family 7 (L-type amino acid transporter), member 9/15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004110 True 1979 mRNA 0.44 6 33747909 33761457

Neighbor

gene id symbol gene type direction distance location
AMCG00004109 NA coding upstream 182046 33561024 ~ 33565863 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 295237 33435750 ~ 33452672 (+)
AMCG00004100 osr1 coding upstream 500345 33241032 ~ 33247564 (+)
AMCG00004101 NA coding upstream 605371 33137636 ~ 33142538 (+)
AMCG00004099 NA coding upstream 612418 33132355 ~ 33135491 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding downstream 5589 33767046 ~ 33767636 (+)
AMCG00004115 NA coding downstream 143834 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 358114 34119571 ~ 34130023 (+)
AMCG00004122 NA coding downstream 369669 34131126 ~ 34133612 (+)
AMCG00004125 NA coding downstream 869764 34631221 ~ 34638669 (+)
G5720 NA non-coding upstream 120402 33626367 ~ 33627507 (+)
G5707 NA non-coding upstream 147898 33597892 ~ 33600011 (+)
G5688 NA non-coding upstream 180430 33566173 ~ 33567479 (+)
G5681 NA non-coding upstream 272862 33474842 ~ 33475047 (+)
G5680 NA non-coding upstream 274579 33473036 ~ 33473330 (+)
G5750 NA non-coding downstream 8132 33769589 ~ 33771848 (+)
G5768 NA non-coding downstream 131017 33892474 ~ 33893143 (+)
G5787 NA non-coding downstream 316894 34078351 ~ 34080785 (+)
G5788 NA non-coding downstream 320369 34081826 ~ 34090122 (+)
G5804 NA non-coding downstream 530814 34292271 ~ 34292501 (+)
G5642 NA other upstream 616723 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1345526 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2853082 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3440734 30296867 ~ 30307175 (+)
G5245 NA other upstream 3476385 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1091406 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 1990993 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2265822 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2500331 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 2926173 36687630 ~ 36697885 (+)

Expression


Co-expression Network