AMCG00004116


Basic Information

Item Value
gene id AMCG00004116
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33875441 ~ 33918321 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004116
GATTTGAAGCTGTTTGAAGACCCTGATCTGGGTGGAGCAGTGAGGCTAGGAGATTCTCTGTTACTCCCCACCGCCTACACAGACAGGAGTGCCAGCACGGACTCCCCACTGGATGAAGATACAGAAGAATTATTCAGggtAGAGGACGACTTCGATAAACTTCTCACAGTCAGCGCAAGTGCCAAGCAAAAACCTAAGCTGCCTCCCAAACCTAAGCCAGACATCCCGAAGAAACCATCGTCTTTATCAAGGAGCAGCGCCAGTCCAGGTGTAGCCCCTCAAGCTGAGAGCAAGACAGAAAGCATGGATCAAATGGATATCCTGAAGTACATCCAACAGAACGAGTCAATGGCCAGCGATAACCTGGACTTGTTT
>TU7105
gaattctgaaGTCTAAAAAGCCGAAACCACCAGCTGCAGAACAACCGGTGAAAccaaagttgtttttgtttgatgaaGAGGTGGATTCAGATGGGGATTTGTTTGAACCAGCAAAGAAGTTTGGTGCAGCCAGAAAAATCTCACCTGCTAAAGACAGTGATTTGAAGCTGTTTGAAGACCCTGATCTGGGTGGAGCAGTGAGGCTAGGAGATTCTCTGTTACTCCCCACCGCCTACACAGACAGGAGTGCCAGCACGGACTCCCCACTGGATGAAGATACAGAAGAATTATTCAGggtAGAGGACGACTTCGATAAACTTCTCACAGTCAGCGCAAGTGCCAAGCAAAAACCTAAGCTGCCTCCCAAACCTAAGCCAGACATCCCGAAGAAACCATCGTCTTTATCAAGGAGCAGCGCCAGTCCAGGTGTAGCCCCTCAAGCTGAGAGCAAGACAGAAAGCATGGATCAAATGGATATCCTGAAGTACATCCAACAGAACGAGTCAATGGCCAGCGATAACCTGGACTTGTTTTAGCAAAGCTTTTCTTTATATTCAGAATGatttttacagatttgttttaaggatttttgtaaaaatcatttttttatatacatcttCGCCCCAGTGCAACATAACACTGGATTGTGAAACACAGTTTTACCAAGATTAAgatatatagtattttataaataatgcaaacactactctatatacagtatacatatttGATGAAGTAACAAGTAGTAATAATCTTTATTAGTGCCATCTAAATTTTTATCTGAATGAACAATACAAAAcgatatgtatttttcatgttaatgttATCATTTCTAAGGTGCTGATTACTAATGAAGATTTTAAATGCAGGTTTATTATTGCAAACACGTTAAAATCTGCTCACGTTAAATGTCTTTCTTACTTTGTAGATTTCTTATTCTTTTCTCTAATTGTATTTCTATAAAAAGGAGATGATTATCATGTGAGTGTAGCTAACATTgtagactgtgtgtgtgaaataataCCCGTTTTAAAAGCTGAATTACAATCCTAATAGAggtctttcatttatttttcatacatgtTAGTTTTACTCTGTTTCAAATTCTGTGTATAGAGATCGATTCATTTCCTGCTGTATAACAGTCCCTGCAGGCAAGATTAGTCACAGGGGCAGACAGTTCCTTCCTTATGGAGCAGCCTTACTTAAATTTGGAAAGGCTGCCTTTGCATGTACTGTACTTTGAATTTCCTGGAAATGGGATATTGTTTGTAGCTTACACGATGTGCagatcttatttaaaaaacaatcattttgatatttcttctattttaaaagtgtaagagaaacaatgtcaaattaaataatgtgtaaaaacGGGTGGTTCTGAATTTATATTGTAGCTCAAAGATCCAGGTTCAGATCCCACCAAGGTctctttataaatgtttttacacaCCCAGGCATACAAACATCAGTATAGATGTCTTttgaaaactaaacattttgaTGATAGACATGGTAAACAAATGAACAGCATCTTAAACTGTTTGAGACATTCTATgtatatgataatatatatattttttttaagaatgtattttttaatttaaaaatgtga

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004116 False 375 mRNA 0.50 2 33876529 33880936
TU7105 True 1621 lncRNA 0.35 4 33875441 33918321

Neighbor

gene id symbol gene type direction distance location
AMCG00004114 NA coding downstream 99244 33775289 ~ 33776197 (-)
AMCG00004111 LOC106607566 coding downstream 143248 33712657 ~ 33732193 (-)
AMCG00004112 NA coding downstream 185475 33687954 ~ 33689966 (-)
AMCG00004104 NA coding downstream 229729 33632974 ~ 33645712 (-)
AMCG00004107 laptm4a,LOC107743288,LOC107726758,LOC107678852,LOC107603102 coding downstream 250848 33611596 ~ 33624593 (-)
AMCG00004118 NA coding upstream 10193 33928514 ~ 33939125 (-)
AMCG00004119 NA coding upstream 31646 33949967 ~ 33968657 (-)
AMCG00004123 NA coding upstream 159858 34078179 ~ 34130995 (-)
AMCG00004129 NA coding upstream 802043 34720364 ~ 34738000 (-)
AMCG00004131 LOC107603081,LOC107742719 coding upstream 854179 34772500 ~ 34794138 (-)
G5721 NA non-coding downstream 247934 33626309 ~ 33627507 (-)
G5645 NA non-coding downstream 770226 33104725 ~ 33105215 (-)
G5570 NA non-coding downstream 1264097 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 1328435 32545377 ~ 32547006 (-)
G5552 NA non-coding downstream 1345603 32527683 ~ 32529838 (-)
G5805 NA non-coding upstream 373948 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 954292 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 959179 34877500 ~ 34878219 (-)
G5929 mut non-coding upstream 985045 34903366 ~ 34906973 (-)
G6009 NA non-coding upstream 1554547 35472868 ~ 35475341 (-)
AMCG00004102 NA other downstream 308116 33566086 ~ 33567325 (-)
G5566 NA other downstream 1279034 32593627 ~ 32596407 (-)
G5540 NA other downstream 1448878 32407802 ~ 32426563 (-)
G5502 NA other downstream 1565531 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 2901945 30969679 ~ 30973496 (-)
AMCG00004120 NA other upstream 97047 34015368 ~ 34031547 (-)
G5801 NA other upstream 213777 34132098 ~ 34135600 (-)
G5871 NA other upstream 973580 34891901 ~ 34892613 (-)
AMCG00004132 NA other upstream 1036385 34954706 ~ 34963885 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other upstream 1426342 35344663 ~ 35414446 (-)

Expression


Co-expression Network