AMCG00004117 (hs1bp3)


Basic Information

Item Value
gene id AMCG00004117
gene name hs1bp3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33896046 ~ 33899005 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004117
atgtttatttttaggcaACTTCAAAATGCAAGCACTGGGATCGATCTCTCTGTGCCCCAGTATCAGGAGATCCGGGGCACAATGATGACGGGTCATGTGGAGTATCAGATCGTTGTGGTCACTCGCCTGGCTGCGTTCAAGTCCGCAAAGCACAAACCAGGGGACGTGGTACAACTTGTGATTTCCAAGAAGTACAGCGAGATTGATGACTTCTACTGCAGGCTGGCAGCTCACTACCCGAAGATAGCCCTGCCGGCGATGCCACGTAAAGTGCTGTTTGTAGGAGATGTGGATATCAGGGAGCGCAGAGTGGCCTTCGACGAGCTGCTCAAATTCCTCTCCAGAAACGCTACCCTTGCCACCTGTCCAGAGCTGCTGGAGTTCCTAGGTGCGTTGTTGTCCCAGATTAGAGACTAG

Function

symbol description
hs1bp3 Predicted to enable phosphatidylinositol binding activity. Acts upstream of or within negative regulation of autophagy. Human ortholog(s) of this gene implicated in essential tremor 2. Orthologous to human HS1BP3 (HCLS1 binding protein 3).

NR:

description
PREDICTED: HCLS1-binding protein 3

GO: NA

KEGG:

id description
K24094 HS1BP3; HCLS1-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004117 True 417 mRNA 0.52 2 33896046 33899005

Neighbor

gene id symbol gene type direction distance location
AMCG00004114 NA coding downstream 119849 33775289 ~ 33776197 (-)
AMCG00004111 LOC106607566 coding downstream 163853 33712657 ~ 33732193 (-)
AMCG00004112 NA coding downstream 206080 33687954 ~ 33689966 (-)
AMCG00004104 NA coding downstream 250334 33632974 ~ 33645712 (-)
AMCG00004107 laptm4a,LOC107743288,LOC107726758,LOC107678852,LOC107603102 coding downstream 271453 33611596 ~ 33624593 (-)
AMCG00004118 NA coding upstream 29509 33928514 ~ 33939125 (-)
AMCG00004119 NA coding upstream 50962 33949967 ~ 33968657 (-)
AMCG00004123 NA coding upstream 179174 34078179 ~ 34130995 (-)
AMCG00004129 NA coding upstream 821359 34720364 ~ 34738000 (-)
AMCG00004131 LOC107603081,LOC107742719 coding upstream 873495 34772500 ~ 34794138 (-)
G5721 NA non-coding downstream 268539 33626309 ~ 33627507 (-)
G5645 NA non-coding downstream 790831 33104725 ~ 33105215 (-)
G5570 NA non-coding downstream 1284702 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 1349040 32545377 ~ 32547006 (-)
G5552 NA non-coding downstream 1366208 32527683 ~ 32529838 (-)
G5805 NA non-coding upstream 393264 34292269 ~ 34292496 (-)
G5869 NA non-coding upstream 973608 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 978495 34877500 ~ 34878219 (-)
G5929 mut non-coding upstream 1004361 34903366 ~ 34906973 (-)
G6009 NA non-coding upstream 1573863 35472868 ~ 35475341 (-)
AMCG00004102 NA other downstream 328721 33566086 ~ 33567325 (-)
G5566 NA other downstream 1299639 32593627 ~ 32596407 (-)
G5540 NA other downstream 1469483 32407802 ~ 32426563 (-)
G5502 NA other downstream 1586136 32309480 ~ 32309910 (-)
AMCG00004060 NA other downstream 2922550 30969679 ~ 30973496 (-)
AMCG00004120 NA other upstream 116363 34015368 ~ 34031547 (-)
G5801 NA other upstream 233093 34132098 ~ 34135600 (-)
G5871 NA other upstream 992896 34891901 ~ 34892613 (-)
AMCG00004132 NA other upstream 1055701 34954706 ~ 34963885 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other upstream 1445658 35344663 ~ 35414446 (-)

Expression


Co-expression Network