Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004122 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 34131126 ~ 34133612 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| K14165 | K14165; atypical dual specificity phosphatase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004122 | True | 652 | mRNA | 0.45 | 3 | 34131126 | 34133612 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004121 | NA | coding | upstream | 1103 | 34119571 ~ 34130023 (+) |
| AMCG00004115 | NA | coding | upstream | 218241 | 33905291 ~ 33912885 (+) |
| AMCG00004113 | rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 | coding | upstream | 363490 | 33767046 ~ 33767636 (+) |
| AMCG00004110 | NA | coding | upstream | 369669 | 33747909 ~ 33761457 (+) |
| AMCG00004109 | NA | coding | upstream | 565263 | 33561024 ~ 33565863 (+) |
| AMCG00004125 | NA | coding | downstream | 497609 | 34631221 ~ 34638669 (+) |
| AMCG00004124 | klhl29,LOC107738561,LOC107678777 | coding | downstream | 532780 | 34666392 ~ 34685790 (+) |
| AMCG00004126 | klhl29,LOC107742703 | coding | downstream | 561791 | 34695403 ~ 34724610 (+) |
| AMCG00004127 | NA | coding | downstream | 664777 | 34798389 ~ 34808422 (+) |
| AMCG00004128 | NA | coding | downstream | 686556 | 34820168 ~ 34834115 (+) |
| G5788 | NA | non-coding | upstream | 41004 | 34081826 ~ 34090122 (+) |
| G5787 | NA | non-coding | upstream | 50341 | 34078351 ~ 34080785 (+) |
| G5768 | NA | non-coding | upstream | 237983 | 33892474 ~ 33893143 (+) |
| G5750 | NA | non-coding | upstream | 359278 | 33769589 ~ 33771848 (+) |
| G5731 | NA | non-coding | upstream | 362312 | 33685727 ~ 33768814 (+) |
| G5804 | NA | non-coding | downstream | 158659 | 34292271 ~ 34292501 (+) |
| G5808 | NA | non-coding | downstream | 248256 | 34381868 ~ 34382099 (+) |
| G5867 | NA | non-coding | downstream | 760490 | 34894102 ~ 34895661 (+) |
| G5875 | NA | non-coding | downstream | 766024 | 34899636 ~ 35350027 (+) |
| G5914 | NA | non-coding | downstream | 1167491 | 35301103 ~ 35306949 (+) |
| G5642 | NA | other | upstream | 999940 | 33130120 ~ 33131186 (+) |
| AMCG00004079 | NA | other | upstream | 1728743 | 32400405 ~ 32402383 (+) |
| AMCG00004056 | ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 | other | upstream | 3236299 | 30887995 ~ 30894827 (+) |
| AMCG00004039 | NA | other | upstream | 3823951 | 30296867 ~ 30307175 (+) |
| G5245 | NA | other | upstream | 3859602 | 30271210 ~ 30271524 (+) |
| AMCG00004138 | fkbp1b | other | downstream | 719251 | 34852863 ~ 34870320 (+) |
| AMCG00004158 | NA | other | downstream | 1618838 | 35752450 ~ 35766180 (+) |
| AMCG00004160 | LOC106571404,LOC106607809,LOC105897019 | other | downstream | 1893667 | 36027279 ~ 36045282 (+) |
| AMCG00004167 | NA | other | downstream | 2128176 | 36261788 ~ 36278234 (+) |
| AMCG00004179 | ptrhd1,LOC103399259 | other | downstream | 2554018 | 36687630 ~ 36697885 (+) |
