AMCG00004124 (klhl29,LOC107738561,LOC107678777)


Basic Information

Item Value
gene id AMCG00004124
gene name klhl29,LOC107738561,LOC107678777
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34666392 ~ 34685790 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004124
AAATGTTGAAGGAGTTGAACGAGCAACGCAGAGCGAAAGAATTTACAGACCTGAAAATTATTGTTGAAGGCAAAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGGTTAAAAGGTCATCAGGGGAGAGCAGGAACGGCGAGAAGCTGGAGCTGACCATGAGCAACATTGGAGCCGACGTCCTGGGGCTGCTGCTGGAGTTTGTTTACACGGGCTCCCTGATCATTGACTCCGTCAACGCCAAGACACTGCTGGAGGCCGCCAACAAGTTCCAGTTCAATACCTTCTGCAaagtctgtgtgtctttcttaGAAAAGCAGTTGACTGCCAGTAACTGTCTGGGAGTCTTGGCCATGGCCGAAGCCATGCAGTGCACTGAGCTCCACAACATGGCCAAGGCTTTTGCCCTGCAGAACTTCCCTGAGGTGGCCGGCCAGGAGGAGATCCTCAACATCTCCAAAGAGGACTTTGTCAGCTACCTGTCCAACGACAGCCTGAACACCAAAGCAGAGGAGCTGGTTTACGAAACTGTGATAAAGTGGATAAAGAAAGATCCAGGCAACAGAGTGCAGCACGTCTCGGAGTTGCTGGCCGTGGTGAGGCTACCCTTCATCCACCCCAGTTACCTGCTGAACATTGTGGACAACGAAGAGCTGATAAAGTCCTCAGAAGCCTGCAGGGACTTGGTCAACGAAGCAAAGCGCTATCACATGTTGCCCCATGCACGGCAGGAGATGCAGACGCCAAGGACTCGACCAAGGCTATCAGCA

Function

symbol description
klhl29 Orthologous to human KLHL29 (kelch like family member 29).

NR:

description
kelch-like protein 29 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004124 True 794 mRNA 0.52 4 34666392 34685790

Neighbor

gene id symbol gene type direction distance location
AMCG00004125 NA coding upstream 27723 34631221 ~ 34638669 (+)
AMCG00004122 NA coding upstream 532780 34131126 ~ 34133612 (+)
AMCG00004121 NA coding upstream 536369 34119571 ~ 34130023 (+)
AMCG00004115 NA coding upstream 753507 33905291 ~ 33912885 (+)
AMCG00004113 rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565 coding upstream 898756 33767046 ~ 33767636 (+)
AMCG00004126 klhl29,LOC107742703 coding downstream 9613 34695403 ~ 34724610 (+)
AMCG00004127 NA coding downstream 112599 34798389 ~ 34808422 (+)
AMCG00004128 NA coding downstream 134378 34820168 ~ 34834115 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding downstream 278676 34964466 ~ 34977633 (+)
AMCG00004139 NA coding downstream 486686 35172476 ~ 35173032 (+)
G5808 NA non-coding upstream 284293 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 373891 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 576270 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 585607 34078351 ~ 34080785 (+)
G5768 NA non-coding upstream 773249 33892474 ~ 33893143 (+)
G5867 NA non-coding downstream 208312 34894102 ~ 34895661 (+)
G5875 NA non-coding downstream 213846 34899636 ~ 35350027 (+)
G5914 NA non-coding downstream 615313 35301103 ~ 35306949 (+)
G6002 NA non-coding downstream 769886 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 780072 35465862 ~ 35466655 (+)
G5642 NA other upstream 1535206 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2264009 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 3771565 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4359217 30296867 ~ 30307175 (+)
G5245 NA other upstream 4394868 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 167073 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 1066660 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 1341489 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 1575998 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 2001840 36687630 ~ 36697885 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018368 klhl29 coding NC_007131.7 CM002904.2 44799375 ~ 45062514 (-)
grasscarp (Ctenopharyngodon idella) CI01000029_04611378_04794476 KLHL29 coding CI01000029 null 4611378 ~ 4794476 (-)