AMCG00004128


Basic Information

Item Value
gene id AMCG00004128
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34820168 ~ 34834115 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004128
CTTCACCAGGACAACAGACTCTCTCTGTGTAGTAAACTATGCTTTGCCATCGGAGGCGCTCCCAACCAGGTAGCAGGAAGTGCTACAGCGTTTTTCCTGCAGATCTATCTACTTGATGTTGCCCGAATTAATCCATTCCAGGCTTCACTAGTGCTGTTCATTGGAAAGGCATGGGGAGCAATAACAGATCCTGTCGTCGGCTTCTTTATCAGCAAAAGCAAATGGACCAGGATTGGGAGGCTTATGCCTTGGATGGTGGGCTGCACTCCTTTCGTGGTGGTGTCCTATTTCTACCTGTGGTACGTTCCGCCCTTCTCTACAGGAAGATTCGTATGGTATCTGGGATTCTACTGTCTTTACCAGACCCTTATCACATGCTTCCATGTGCCTTACTCAGCCCTCACCATGTTCCTCAGCACGGACCAGAAGGAGAGAGACTCAGCCACTGCCTACAGAATGACCATGGAGGTTCTGGGGACACTAATTGGAGCTGCCATCCAAGGGCAAATAGTGGCAAGTGCCCACACCTCCAAACACTGCCCACTGTACAATGCCTCTACAAACCGGCCTGGCAACAGCAGTCACCCATCCCAGAGTGAGCAAGCCACCAGCAACCCTGCCCTCACCCAGGACTTCCTTTCACATGCTAAAGAAGTGTATATGATCGCAGCAGGTGTGATCGGAGCCCTCTTCCTGCTGTGTACAGTGGTGCTGTTCCTcggagtgaaggagagagacGATCCCTATGCACTGAAGTCAGACAAGCCAATTCCATTTTGTAAAGGATTCAGACTGGTAATGAAGCACGAACCATACCTTAAACTGACAGCAGCATTCCTCTTCATATCTGTGGCTATCCAGATGTCTGCAGTTGTGAGTATCCCATTATGGCAGTGGTTCCTGCAGAGGTTTGGCAAGAAGACAGCAGCATACTGTGGCATTTCATGGATAATTCCATTCACCATCATGCTCGTCTGCATTCCCAATCTGATCGTGGCCTACGTGGTCGCTGTCTCATCTGGACTCAGCGTGGCGGCCTCTCTCCTGTTGCCATGGTCCATGCTGCCTGATGTCGTGGATGACTTCAGATTGCAGAACCCCCACTCCAAGGGCCATGAGGCGATCTTCTATTCCTTTTATGTGTTCTTCACCAAGTTCGCTGCAGGGATTTCATTAGGAGTTTCTACACTTTGTCTTGAATTTGCCGGCTACAACACCGGAGCTTGCAGGCAGCCCCCCCTGGTGGCCTACACACTGAAACTGCTGATTGGAGCAGCACCTGTGGCTTTCATTGCCATTGGATTGATGATCCTGCTCCTGTACCCAATCACAGAGGAGGTCAGGCTGAAGAATATGATGGCCCTGGAGGAGCTCAGGTATGCCACCGACAACATGGCCTCAGCTCAGGAAGTCAAGTAA

Function

GO: NA

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004128 True 1419 mRNA 0.51 12 34820168 34834115

Neighbor

gene id symbol gene type direction distance location
AMCG00004127 NA coding upstream 11746 34798389 ~ 34808422 (+)
AMCG00004126 klhl29,LOC107742703 coding upstream 95558 34695403 ~ 34724610 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding upstream 134378 34666392 ~ 34685790 (+)
AMCG00004125 NA coding upstream 181499 34631221 ~ 34638669 (+)
AMCG00004122 NA coding upstream 686556 34131126 ~ 34133612 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding downstream 130351 34964466 ~ 34977633 (+)
AMCG00004139 NA coding downstream 338361 35172476 ~ 35173032 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding downstream 373416 35207531 ~ 35210874 (+)
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding downstream 405117 35239232 ~ 35248925 (+)
AMCG00004149 NA coding downstream 523307 35357422 ~ 35359998 (+)
G5808 NA non-coding upstream 438069 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 527667 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 730046 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 739383 34078351 ~ 34080785 (+)
G5768 NA non-coding upstream 927025 33892474 ~ 33893143 (+)
G5867 NA non-coding downstream 59987 34894102 ~ 34895661 (+)
G5875 NA non-coding downstream 65521 34899636 ~ 35350027 (+)
G5914 NA non-coding downstream 466988 35301103 ~ 35306949 (+)
G6002 NA non-coding downstream 621561 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 631747 35465862 ~ 35466655 (+)
G5642 NA other upstream 1688982 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2417785 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 3925341 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4512993 30296867 ~ 30307175 (+)
G5245 NA other upstream 4548644 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 18748 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 918335 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 1193164 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 1427673 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1853515 36687630 ~ 36697885 (+)

Expression


Co-expression Network