AMCG00004130


Basic Information

Item Value
gene id AMCG00004130
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34836423 ~ 34849187 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004130
AGGAAGACGTGCCGCAGATAGGGAACTAAACAACGTGCAGCTTACACATCCTTCTGGAAATGGAAATTTAACAGATCAGAAGCATGGATCTGGGCAAGGCGAAGCTTCTGAGGACTGGTCTGAATGCTTTGCATCAAGCCATCCACCCTGTGCACGGCATAGCTTGGACAGACGGGAAGCAAGTGGCACTTACAGCTGTATATCTGGCTAACGGAGAGCCAAAGTTTGGTGACACCAATGTTATTGGGCAATTTGACCATGTTCTTGGACTTTTTTGGGGCCCAGTTTGCTGCACGGGGTCTCCAGCACTTCTGGCTGTCCAGCACAAGAAGCATGTAAGTGTGTGGCAGCTCCAGCTCAGCACtctggaacaaaacaaactccTCTGCACCCAGACATGTGAAATGAGCGAACCCTTCCCAGTGCTCTCTCAAGGTTGTGTCTGGCACCCCAAGAAGGACGTCCTTGCTATACTAACCAAACGGGATGCCTCTGTGTTGTTTTCGGTCAGGGTGGACAATCGCAGGGTGAAAGCGGACATCAAAGGCAGTGGCTTGATACACTGTGCTTGCTGGACAAAAGATGGCATGAGGCTAGTGGTTGCCATTGGGAGTGCTCTCCACTCCTACGTTTGGAATGACATCCAGAAGAGCCTCAATGCCTGTTCTTTCTGTCCCATCTTTGACGTTGGGGGTTATATATGTGCTATAGAATCTACAGAGGATGCCCAGGTAGCCGTTGCCACAGAGCTGCCTTTGGATAAAATCTGTGGGCTCAATGCTGGCATGGCTTTTGACGTTCCCTCTTCATCAGAAACGGGCTCTTTGCCTTCACAGTCCTCCGTGCTGGTTGTGGATGAGGACTGCTTCTTAGACTCGAGGAGGAGGTCGATTGACTCCGAAAGATCTTTAGCTCTTGCTTCCATTGCTTCCTCCACATCTGGGCCATTGGATTTAACACACATTCTTGCAAACCACAGGAAATCAGACCCCAGCCCTCTTATTCACTTGAGACGCCGGGACCACATTACTGGATCTGGACAAGATTCTTCCTATTTGATCTTGGTGACTTATGAAAGAAAGGTGACAACAACCAGAAAAGTAAGTATTCCTGGTATTCTGGTCCCTGATATTATAGCTTTTGATTCTCGTGGACGTACTGTCGCAGTGGCCTCCAACACATGTAACATGGTTCTGGTGTACTGTGTAACTGCCTCTGCCATGCCCAATATCCAGCAGATCCAGCTGCAGAAAAACGAACGGCCGAAGGGAGTATGCTTCTTGAATGAGAAAATGCTGTTACTCTTAGTGGGTAAACAGAAGTCAAACGACCCAGCTTTCCTTCCCTCCTCTAATACTGACAAGTACATCATCAGGCTTATGACCAAAGAATTACTTTATGATGAAGAATCACCTTCCTTGTCTGGTTTCAGTCAAATCTCTGCATCCAGTATTGACTCGGGTGTCAGTATCCCTGGGATAAAGAAGTACTTTGAGAACTTGTCAAAGGACGAGCGTTCAGGAGTAAAGGAACTCCTACTTCCAACAGGCACTGTCATCCAGTCCCCCAGCGGCAGGAGAAAGCTGATTGAAGAGGTGAAGAGCTGCGACGAGAGCCCATTGACAAGTGCCACAGACATTTCGGAAAGGGCAACATCCAGCGAATCCTCAATAGCCATAGAAAACTTTGATATGGAGCCTGTAAACCGTGCTGTTGGCTTAATTGTTGCTGGGCAAGTCAGCAGAGAGTCAAGTAGGCCCTGTTCCCCAAGATTAGACCCTTCAGAAAGACTCCAGCCTGCACCGACTGTCTCAAAGAACAACAGCCCGCCAAAGGACAAAGTGGTGGATCATCTCTCCCAAAACCTGGAACGGCTATTTGCACGATTTTCAGAGGTACAGCAGTGCCTCTCAGAAATCACAGACTTCACTCGAAATGGAAAGAAGTCACTGGGGGCCTACCCCTCATCGTCTGATCCCCCCTTCATCAACATCACATGCCAGAAACAGCTGTCTGAGAATGTGTTTATTGACGAACGGAGGCCTGTGCTGTTATGTGATGGCAAATTGTGTCTGCGGGTTGTCCAAGAGCTTTTCAATCTGTCAGTTGTAGAAATGCTGCATGGTCCTCTCTGGATAGTTCTGGTTGCCGATGGGGAAGGATTTGTTCCACTAACATTTAAACCCAAGGATGAAATCACTGTTCGAAACGGAAAGTCCAAGCCTCTCCCACGGTCCCACTTTGGCGCTGACGGGTCACGACCGGAGAGCCCCCTTTTCCCGAGCTCAGAAAAGTAGACGTGGGAAATGACGTCTCTGACGACATCTGATGATGTCGCCCGTGAACTGTTTATTATGGCAGTGGACAGAGCTGTGATGTATGACTGTATTATGTCAGTGTTTTCTGCAGCATATTTATAGAGATTAATTTGAGATTTACCTGCTTTTAATGACATACAGTTTATAATAGTCTGATGTGTTCTCCGATCCAgagtttgattgtgttttttgattttattcatttacttgATGGTTAGGCTAGATTTTGTTTCTTAACTGAGTCTAGCATGAATGAATGAGACATTGTTAAACCTAACAGCAATATTTGAAAAGGATGTATCTCCCCCCTTTATTCAGCCATAAAAGagcaatgttttacatttaatttcttgggGGTCAAGTGCATTCgtaatctttttttaaagtaaggCATATGGCGCTTTAGACAGAAAACTTAAGATCTACCTCAGTTTGGCTAGGGAATactatgaaaaatatgaatgtgattGTAATACAAAGTGACTTGTGTTTAACTTGTGTTTGTCAAGTTTCTCAAAATATATGAATCTAGAAATAATCTACTGTTATTGTTCATTCAGCATATTTGACTCTCTTGTGTAGGTTCACAGACATTTGTATAAAACACtgctttgttcatttttaaattatgtatacagACTTATATTTCCATTGCATGTTTTTATAGTCTGacaagaattatatttttatgcattgaaaaagaaaatacatatttacttcCTGAcctcattatatatattcaaatagtTTTAAATTGCCAAATGAATGTGATAGTTACAGTGTATGTAGACCTATGGACTCTTGATATAATGTACTACTTTATCAAATTGTACTATTAGCCATACgttgcataatatatattttttctcatgtATATTcagtaaggaaaataaaaaataaattaactgtaaaGTACAGATTTAAGACATACTTGTTATGTTAATCAAGGTCCCTTTGTGgaacactttattttctgtattcaaacccattttttttttgtatttattttagaactGGTATtaactgtattgtactgtatcaatattatttttctgttttattgtatttctttaggTATTTTTGGTGCTGGATGTCTAGGAATGTAAATTATTGTTAACCATGAGCCCCCTATGGCATATTGTACAGGTGGGAAGCTGCAGTGTTGAACTTTATCTCGATGCCCCACCGGACGTGCCTCAAAcctgctctgtctgtctcactccacGGCTGCCTGAAGGTGCACAATTGTATAGTGTTGTTGTGATGCAAGTTCTGAAATACAGGCCCGAGTTAGACCTCCAAACCCATTTTCTTTGGCTGTCTGGTCTGGTGTCAATAATGTCAATCTGGAGagttttaatggaaaattaacacacagtgtcacaaaatattttaaattgaagcaTTGGTTTTAGGTTTGTTAACTTCCATAAGCATTATGTTTTAGGTGTCATTTCTCCACTTGACTCATTGGGGAAAACCAGTGTTAACTGACTACCATGATGATCATGTTTTCTGAATACGGTAAAAGGGATCAAAAGCAAGCTTGTGACCACTTACACTTTCAAATACCTTCTTGGCCAAGCATTTAATTCCAGCAACATTTGCTAGATGTGTTTGTAATCTGTTAATGAGTTACTTGGCTAAGTTACTGATTGGAAATCCCAGGCTTTCCCAATTAGTGAGCTTCGCACATGAACATGAATTTTGGTAAGTCACACTCCAGAAAAAGAACATGGTAAATATAAATCTGAATAAACTTCTGGTggg

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004130 True 4088 mRNA 0.42 4 34836423 34849187

Neighbor

gene id symbol gene type direction distance location
AMCG00004131 LOC107603081,LOC107742719 coding downstream 42285 34772500 ~ 34794138 (-)
AMCG00004129 NA coding downstream 98423 34720364 ~ 34738000 (-)
AMCG00004123 NA coding downstream 705428 34078179 ~ 34130995 (-)
AMCG00004119 NA coding downstream 867766 33949967 ~ 33968657 (-)
AMCG00004118 NA coding downstream 897298 33928514 ~ 33939125 (-)
AMCG00004134 NA coding upstream 71424 34920611 ~ 34924533 (-)
AMCG00004133 NA coding upstream 97687 34946874 ~ 34949603 (-)
AMCG00004135 NA coding upstream 210875 35060062 ~ 35069488 (-)
AMCG00004136 supt3h coding upstream 231418 35080605 ~ 35086956 (-)
AMCG00004142 clic5,LOC103355727,LOC105017981 coding upstream 451916 35301103 ~ 35316365 (-)
G5805 NA non-coding downstream 543927 34292269 ~ 34292496 (-)
G5721 NA non-coding downstream 1208916 33626309 ~ 33627507 (-)
G5645 NA non-coding downstream 1731208 33104725 ~ 33105215 (-)
G5570 NA non-coding downstream 2225079 32604888 ~ 32611344 (-)
G5555 NA non-coding downstream 2289417 32545377 ~ 32547006 (-)
G5869 NA non-coding upstream 23426 34872613 ~ 34897907 (-)
G5870 NA non-coding upstream 28313 34877500 ~ 34878219 (-)
G5929 mut non-coding upstream 54179 34903366 ~ 34906973 (-)
G6009 NA non-coding upstream 623681 35472868 ~ 35475341 (-)
G6030 NA non-coding upstream 818850 35668037 ~ 35668538 (-)
G5801 NA other downstream 700823 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 804876 34015368 ~ 34031547 (-)
AMCG00004116 NA other downstream 918102 33875441 ~ 33918321 (-)
AMCG00004102 NA other downstream 1269098 33566086 ~ 33567325 (-)
G5566 NA other downstream 2240016 32593627 ~ 32596407 (-)
G5871 NA other upstream 42714 34891901 ~ 34892613 (-)
AMCG00004132 NA other upstream 105519 34954706 ~ 34963885 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other upstream 495476 35344663 ~ 35414446 (-)
AMCG00004178 NA other upstream 1646585 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 1919861 36769048 ~ 36779062 (-)

Expression


Co-expression Network