AMCG00004132


Basic Information

Item Value
gene id AMCG00004132
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34954706 ~ 34963885 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004132
tgcagaaaaaaacaccGGAAGTAAGCTTTCTATCTAGTTCCGGTGCTGCTGGTAGGACAGTGTTCGAAATGTAGTTTTTTCGGGGGGTTGTTTTcggtttttgtattgttttgtatttcgtTTTTAACAGTTACAGAAACGGTTAATATAGCCCACGCTGTGTGCCCACATACAGTAATATGCCTTGAGTAGTGACGTTTGAAATGTTGAAGAAACGTGGCGCAAAGTGCCTTCTTGTTCCTGTCACGATTTGTGTGATAAACTCGGATGAGGAAGATCCCTTGCCCTGTTTAGCTGAAGACGTTAAAGAAGCAGAACCGAGTTCCACAGAACCTGTCAAAGAAGgttctGAAGAGTTGGATCTTGGTCCCAGTGAAATTATCATTCCCCTCTCTGCCCCAGTGAAGCTGGCAGAAGATAGGAACATTCCTAAAGACAAAGATTTCAAAGCTCTTAAGACATACGAGCAACATAAAAGAGAGGATGAAACAGTGGACCTGCAGCAGGAGGCTGATTTCTGTGCATCAGGGCAAGAGATCCAGAAGAGTAGGAAAGGGCCAGATGAACTGGTGGAGGATgaatgtctttgtgtttctaTGAGCCCAAGATCCTCGTTTTCCCTCCCTGATGGTGTGACGAATCCAGGCATTCAAGAGGCCAAACACAGTGGTGAAGGCCCACCAGATTTGTACTGTAGGCGATGCAAATTTTCAACAAATGACATGGAGCACTTTATACAGCACGTAAATAAACACCCAAGAAACAGCGAACACAGAGGGCCTCCAGATGACAAAGCACAGCGTAGCAATGAGCAGCATTTGACGCCAAAAAGACGGCATAGACACTTCACCTGTGACAGCTCTGATTGTTCTGCAGAGGAGTTGCAAAATGAAAGGCACAAGAAAACACCCCGTAAGGAAAATGTTTCCAAGAAAGATGACAAAGCTGCAAAGGATTCAGAGGACAGTGCTAAAACTGTCTCTAGAGAAATAGGATCTAAAGTcactgaagaaattaaaaggaCTATTGATAGCAACATTGCAGAAGTAAATGGTAAACAACTTACCTGCCATCTTTGCAAGGTAACATTTCACAAAGCCTACCAACTGGAGAATCATAAGAAAGTCCACCTGAATTCCAATACTTTTTTCAACTGTGATCACTGTGACTACACCACCCATCTGTCTTACAACCTGAATTGCCACAGCATGATTCATACAGGGGAGAAACCATTCCGGTGTAACAGCTGTGAATGCTCCTTTCGGCTGAAGAGTCATCTCAGTCGACATAAGAGTGTTCATCTCAGAATTAAGACTGAAGGTCAGGAAATAAAGTCTGAGGAAAAGATGCCATCCATAAGCCAAGAACATGATAGCAGTGATGAGGATAGCAAGTTACTCTTAAGGCATGCGCACACCTGTGATGTATGTCAGTACTCCACTTCCAGTTCCTACAACTTGAAATGCCACAAGAGAATTCACACGGGTGAGAAACCATACCAATGCAAGGAGTGCAATCATAGTTTTCGCCATCTCAGCCACCTGAACCGCCATAAGCGGGTGCATGTGTTCTCTGAGACTGTAAATCCAAGTAAATCCAAGAAGAGCAACCAGCAAGACAACACTCATTGCAAGACAGAGGAGTGCTCTaaagttcacacacacagctgtgaaaAGTGCAACTATAGCACCGACAATGCTTACAACCTCAAGGTGCATTTTAGAACGCACACAGATGAGAGGCCGTACAGGTGCAGGAATTGTGATGCTGCTTTTCGAACCCAGAGCCACCTTTACCGCCACGAGAGGACCTTAAATAAAGTGGGCTGCAAGCAAGGTAACTGATCTGAAGCACTGATCTGCAAGATgctacaatttatttaaaattgagaaAAGAGTTTAAGCGGAAAGATTTACCATGTCTCATTTTCAAGCTAATTTCTATAGTGAGAGCTGCATCACTGTGTTAGTTTTTCTTTGAatcttactgtattttatttgttgttgcatAGTCTTTTTTCAATTGTTGTATATAGGTTTCATTGTTCAAGTGTTCCAAAAATATTGTTAAGGAAATATAATAAGTAGGCCCATTTATCTGAAAAGTAATTACGAATATCCAAAGTTTGGTACAATTAAATCATTGGTTTGTTACACAAGTATTCTTGACAGCAATCAGTAGCTTCGTTTTTTTCTTGGATATTCTAATGATTGAAAAATCTGTTTGAAATCGTGCAGACAAAGATCATTGTGATGGGGGAAAGACAGAATTGTTTTAACTCTTTCGTTTTTGAgagagaatatatttattttcctttaaaggcCCTTTTGTTAAAGTAAAGTGTTCAAACAAGAGAGCTTTGGATGTCTGTTTGTCTAATGTTTTTTGGAAAAATTCCTCAAGGAATTAAAGCCCTGAACGAACcatgaattgtattttgtaacaaataaagacacattctttaaaaacaaacaaacaataaaacagcacacaGATACAAGAAACTAGGAATTTATTCACAAGAGACAAAAAAGTAGAAGTTGAGCATAAGTGAAGGAGAGATGCAGCAGTGTTTCACATTATGAAGTTCTACAGAAACATGATCcacatttagatttatttaatggAAG
>TU7292
TGCTGGTAGGACAGTGTTCGAAATGTAGTTTTTTCGGGGGGTTGTTTTcggtttttgtattgttttgtatttcgtTTTTAACAGTTACAGAAACGGTTAATATAGCCCACGCTGTGTGCCCACATACAGTAATATGCCTTGAGTAGTGACGTTTGAAATGTTGAAGAAACGTGGCGGCTGTTTCGTTTAAATGCAAATTCGGGCTGGAAATGGAtatacaggaagaaaaaaacaatttctcCGGTGCAAAGTGCCTTCTTGTTCCTGTCACGATTTGTGTGATAAACTCGGATGAGGAAGATCCCTTGCCCTGTTTAGCTGAAGACGTTAAAGAAGCAGAACCGAGTTCCACAGAACCTGTCAAAGAAGATTTACCTAAAGCAGGTACTTCTTCCGgtcaagaaaagagaaaaaagttcTCTCATTGGTTGGTTGACTTTGAGAAATTTCAACATGTTCAAAAAAGTGCCAGCAAAATCACTCCTGATGGTATTGTAAGAAGAACAGTCttgcagaagaaaaatctcTTCAGTGAGAAAAGTGCTGAACTGCCATCTCAGAGTAGCTTGGAAGATGTTGTGGAAAAAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004132 True 2630 mRNA 0.40 3 34954706 34963885
TU7292 False 589 TUCP 0.42 4 34960960 34963839

Neighbor

gene id symbol gene type direction distance location
AMCG00004133 NA coding downstream 5103 34946874 ~ 34949603 (-)
AMCG00004134 NA coding downstream 30173 34920611 ~ 34924533 (-)
AMCG00004130 NA coding downstream 105519 34836423 ~ 34849187 (-)
AMCG00004131 LOC107603081,LOC107742719 coding downstream 160568 34772500 ~ 34794138 (-)
AMCG00004129 NA coding downstream 216706 34720364 ~ 34738000 (-)
AMCG00004135 NA coding upstream 96177 35060062 ~ 35069488 (-)
AMCG00004136 supt3h coding upstream 116720 35080605 ~ 35086956 (-)
AMCG00004142 clic5,LOC103355727,LOC105017981 coding upstream 337218 35301103 ~ 35316365 (-)
AMCG00004144 mut coding upstream 410939 35374824 ~ 35375162 (-)
AMCG00004147 NA coding upstream 428143 35392028 ~ 35394336 (-)
G5929 mut non-coding downstream 47733 34903366 ~ 34906973 (-)
G5869 NA non-coding downstream 56799 34872613 ~ 34897907 (-)
G5870 NA non-coding downstream 76487 34877500 ~ 34878219 (-)
G5805 NA non-coding downstream 662210 34292269 ~ 34292496 (-)
G5721 NA non-coding downstream 1327199 33626309 ~ 33627507 (-)
G6009 NA non-coding upstream 508983 35472868 ~ 35475341 (-)
G6030 NA non-coding upstream 704152 35668037 ~ 35668538 (-)
G6034 NA non-coding upstream 708566 35672451 ~ 35672679 (-)
G6037 NA non-coding upstream 710061 35673946 ~ 35676120 (-)
G6068 NA non-coding upstream 856373 35820258 ~ 35820483 (-)
G5871 NA other downstream 62093 34891901 ~ 34892613 (-)
G5801 NA other downstream 819106 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 923159 34015368 ~ 34031547 (-)
AMCG00004116 NA other downstream 1036385 33875441 ~ 33918321 (-)
AMCG00004102 NA other downstream 1387381 33566086 ~ 33567325 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other upstream 380778 35344663 ~ 35414446 (-)
AMCG00004178 NA other upstream 1531887 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 1805163 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 1819858 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 2360125 37324010 ~ 37381953 (-)

Expression


Co-expression Network