AMCG00004136 (supt3h)


Basic Information

Item Value
gene id AMCG00004136
gene name supt3h
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35080605 ~ 35086956 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004136
ctACAGCAAGCAGCAGAAGTGTCACTCCTAAGAGGTGCCCGAGTGATTTCACCTGAAGACATCCTGTTTCTAATGCGCAAAGACAAGaaaaaaatacgAAGATTGCTGAAATACATGGTTTTCCGTGACTACAAATCCAAAATCATTAAAACCATTGATGAGGAAGAGACACTCGAAACAGATAAATTCAGCAGcagcaatgtaaacaaacgGCAGAAGTTGGCTCATGACTTTCTCAGCTCCATTGACCAGACTGGAGAATTCTTGGCCCTGTTAGCAGATGATGACGTTGATGAAGTCAAGCAGGAGAGGCTGGAG

Function

symbol description
supt3h Predicted to enable transcription coactivator activity. Predicted to be involved in histone H3 acetylation. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be part of STAGA complex. Orthologous to human SUPT3H (SPT3 homolog, SAGA and STAGA complex component).

NR:

description
PREDICTED: transcription initiation protein SPT3 homolog

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004136 True 318 mRNA 0.43 3 35080605 35086956

Neighbor

gene id symbol gene type direction distance location
AMCG00004135 NA coding downstream 11117 35060062 ~ 35069488 (-)
AMCG00004133 NA coding downstream 131002 34946874 ~ 34949603 (-)
AMCG00004134 NA coding downstream 156072 34920611 ~ 34924533 (-)
AMCG00004130 NA coding downstream 231418 34836423 ~ 34849187 (-)
AMCG00004131 LOC107603081,LOC107742719 coding downstream 286467 34772500 ~ 34794138 (-)
AMCG00004142 clic5,LOC103355727,LOC105017981 coding upstream 214147 35301103 ~ 35316365 (-)
AMCG00004144 mut coding upstream 287868 35374824 ~ 35375162 (-)
AMCG00004147 NA coding upstream 305072 35392028 ~ 35394336 (-)
AMCG00004146 NA coding upstream 320291 35407247 ~ 35413748 (-)
AMCG00004148 NA coding upstream 332908 35419864 ~ 35423230 (-)
G5929 mut non-coding downstream 173632 34903366 ~ 34906973 (-)
G5869 NA non-coding downstream 182698 34872613 ~ 34897907 (-)
G5870 NA non-coding downstream 202386 34877500 ~ 34878219 (-)
G5805 NA non-coding downstream 788109 34292269 ~ 34292496 (-)
G5721 NA non-coding downstream 1453098 33626309 ~ 33627507 (-)
G6009 NA non-coding upstream 385912 35472868 ~ 35475341 (-)
G6030 NA non-coding upstream 581081 35668037 ~ 35668538 (-)
G6034 NA non-coding upstream 585495 35672451 ~ 35672679 (-)
G6037 NA non-coding upstream 586990 35673946 ~ 35676120 (-)
G6068 NA non-coding upstream 733302 35820258 ~ 35820483 (-)
AMCG00004132 NA other downstream 116720 34954706 ~ 34963885 (-)
G5871 NA other downstream 187992 34891901 ~ 34892613 (-)
G5801 NA other downstream 945005 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 1049058 34015368 ~ 34031547 (-)
AMCG00004116 NA other downstream 1162284 33875441 ~ 33918321 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other upstream 257707 35344663 ~ 35414446 (-)
AMCG00004178 NA other upstream 1408816 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 1682092 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 1696787 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 2237054 37324010 ~ 37381953 (-)

Expression


Co-expression Network