AMCG00004138 (fkbp1b)


Basic Information

Item Value
gene id AMCG00004138
gene name fkbp1b
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34852863 ~ 34870320 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004138
CACCTTGTGAAAGCAGTGCCTATTCCTGGGTGTCATGAAAGATTTGCTCTTGTCGTTGTAGGCATGCTCCAGAACGGGAAGAAGTTTGATTCCTCCAGAGACCGAAACAAGCCGTTCAAATTTAAGATAGGCAGACAGGAAGTCATTAAAGGCTGGGAGGAAGGAGTGGTGCAGATGAGTCTGGGCCAGCGAGCTAAACTCACCTGCACACCAGACATGGCCTATGGGGCTACAGGACATCCTGGTGTGATCCCCCCCAATGCCACTCTCATCTTTGATGTGGAGCTTCTGAAACTGGAGTGA
>TU7209
AGTGAGAAGGCGCTGGCGAGAGCTGCGGTCCTGCTGTCCAGAGAGTGGCATCTCCTATTGCTAGTGAGCCACCAAATTAAAAACCATGGGGGTGGAAATTGAAACAATCTCTCCAGGAGACGGAAGAACGTTTCCAAAGAAGGGCCAGACATGCGTTGTGCACTACACAGGCATGCTCCAGAACGGGAAGAAGTTTGATTCCTCCAGAGACCGAAACAAGCCGTTCAAATTTAAGATAGGCAGACAGGAAGTCATTAAAGGCTGGGAGGAAGGAGTGGTGCAGATGAGTCTGGGCCAGCGAGCTAAACTCACCTGCACACCAGACATGGCCTATGGGGCTACAGGACATCCTGGTGTGATCCCCCCCAATGCCACTCTCATCTTTGATGTGGAGCTTCTGAAACTGGAGTGAAGACAACAGCAGGAGAAACAGTCCCACAGATTTTAGCatcttaaacattttacttgCCGTACTTTTGCTTCATTGCCAATTATGTCATTGGATACTAATgtcattttttcttcattttgtttttccttgttgtttttttggagggaggggggcttttttttttttcttgatacCGTCTTGTCTTTTTATGTGTTGATTAATGTATTTGGCTTTGTCGTTTACTATGTTTATATTAccaaaagcatttttgttttcttttaaggttgtacattttattgaaatctgcaaattgcaaacaaaataacaaaaatatatctgtatatctatatataactACTGAAACCACTGCCTTACTTTCCAGAGAAGCACGGAAGCAGAGTATAACTGTACAGCTTTCTGTACCTTAACGGGCATTAACAACCACTCTGTCTGCCACTCTTGATTAGGGTATATTCTGCTTACTACTGttgaaaatgttgttgttgtgtttagtTTGTAAAAAATCCCTTATAAATGTTTTCCGTAATTATACCTTTATGAAAAGCACAGTGGAAATTTGTAAGGCTCAGCCTACGATTTTTCTGGCTGAGATTGCCAAATGAGATGGTAACAATTTGATCAATAAgctccttttaaaaacaactacaacCCTGTTTCTGAACTGGCGGAGCTGCCATACCAGTCTGTGCTTCCTGTGTGCCAGGGAGAGAGCTGCAGAGCTGCAAATGGTATTATTTTCTCCTGCGATTCAAGACCCAAGGCATCcataagtgacacattttggaatgAATCCTCTGCTTCTCCCATTCCCCAATGTTGCTGTAATAAATATGTCAAAAAGAAGCAAGGATTCGTTGTATTTGCTTGTACAATAAATCTCGTAACTGAAATACTGGGGTGGACTGATCACAAAGTCGTattctgttctcttttttttttcttcaaacttTCAAAACGTGAAATTAACAACCAAAGAATGAAACTTCGCAGCTCATTGTGTATTTCTAGTtttgtaacattaaaacaggtatttataactttttttttgaaGACAACATTGTGGGAATTATGATTTGGAGTGAAAGGCTGTGGATTCCTCTCTGTATGTACTATATGCCTATGTAAAGCTTAGGCACCCTCTCTGCAGTTTGAGTCCCTAGGCTAATGCTTATTCTGCTTATGATTAGTGCACTATGCATGATTACACACAGACATCAATGCAGAGAAAAGCTGCTGAAGTTGAAGCACAGGAATGACATGGTAGACCACAGTGTCACCTTGCATATATTCACCGATGGTAAACTTTTATATGGGAAATGGCTGGCTGTTCAAATTTTCAGCAggtgttaaatgttaaaactgaAGTGTGACATTTCAGTATGCTATTCATGAAGCTGTGTGGGAAAGAATAAAACCCCATGAATAATTCATAAGAAATCA

Function

symbol description
fkbp1b Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).

NR:

description
peptidyl-prolyl cis-trans isomerase FKBP1B

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004138 False 303 mRNA 0.50 2 34867992 34868880
TU7209 True 1852 TUCP 0.40 4 34852863 34870320

Neighbor

gene id symbol gene type direction distance location
AMCG00004128 NA coding upstream 18748 34820168 ~ 34834115 (+)
AMCG00004127 NA coding upstream 44441 34798389 ~ 34808422 (+)
AMCG00004126 klhl29,LOC107742703 coding upstream 128253 34695403 ~ 34724610 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding upstream 167073 34666392 ~ 34685790 (+)
AMCG00004125 NA coding upstream 214194 34631221 ~ 34638669 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding downstream 94146 34964466 ~ 34977633 (+)
AMCG00004139 NA coding downstream 302156 35172476 ~ 35173032 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding downstream 337211 35207531 ~ 35210874 (+)
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding downstream 368912 35239232 ~ 35248925 (+)
AMCG00004149 NA coding downstream 487102 35357422 ~ 35359998 (+)
G5808 NA non-coding upstream 470764 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 560362 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 762741 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 772078 34078351 ~ 34080785 (+)
G5768 NA non-coding upstream 959720 33892474 ~ 33893143 (+)
G5867 NA non-coding downstream 23782 34894102 ~ 34895661 (+)
G5875 NA non-coding downstream 29316 34899636 ~ 35350027 (+)
G5914 NA non-coding downstream 430783 35301103 ~ 35306949 (+)
G6002 NA non-coding downstream 585356 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 595542 35465862 ~ 35466655 (+)
G5642 NA other upstream 1721677 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2450480 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 3958036 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4545688 30296867 ~ 30307175 (+)
G5245 NA other upstream 4581339 30271210 ~ 30271524 (+)
AMCG00004158 NA other downstream 882130 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 1156959 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 1391468 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1817310 36687630 ~ 36697885 (+)
G6314 NA other downstream 1903681 36774001 ~ 36774523 (+)

Expression


Co-expression Network