AMCG00004143 (mut,LOC107726528,LOC107697172,LOC107726757)


Basic Information

Item Value
gene id AMCG00004143
gene name mut,LOC107726528,LOC107697172,LOC107726757
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35344663 ~ 35414446 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004143
atgTCTGGGCAGCAAGGCTTATCAGTGGCTTTCGACTTGCCCACTCATCGAGGCTACGACTCCGACAACCCCCGTGTACGTGGCGATGTGGGCATGGCTGGTGTTGCTATTGACACCGTGGAAGACACAAAGATGCTGTTCGATGGGATTCCTTTGGAGAAGATGTCTGTTTCCATGACAATGAATGGAGCTGTGATTCCCATCCTGGCCATGTTTATCGTGACTGGAGAGGAGCAGGGCGTCCCTCTGGAGAAACTGACAGGGACCATCCAGAACGACATCCTGAAGGAGTTCATGGTCCGAAACACATACATCTTCCCACCTGAGCCCTCCATGCATGCCATTGCTGACATATTTGCGTATACTTCGAAGCACATGCCCAAATTTAACTCAATTTCTATCAGTGGGTACCACTTACAAGAAGCTGGAGCTGATGCCATCCTTGAACTGGCTTACACCTTGGCCAATGGTTTGGAATACTGCAGGACTGGTCTGAAGGCGGGCTTAAGCATTGATGAATTTGCTCCCAGAGGAGCCAAAGTGATTGCTACTGGCTTTGCTGATTTAGGATTCGATGTAGATATCGGACCTCTGTTCCAGACCCCTCTGGAGGTAGCCCAGCAAGCTGTGGATGCTGATGTTCACTGTGTGGGGGTCAGCACCCTGGCAGCCGGCCACAAAACTCTGGTTCCAGAACTCATCAAAGAGCTGAGGAACCTGAATCGCCCCGATATCCTTGTCATCTATGACCTGCCGGCGGACTGGTGTGGACAGCCACAAGTGAGCAGGATGACCCACAACCAGGCTGAAGAGGAGGAGCTGCCGTCCCCAGAGTCATTCTCGGCACGTGCAAGGGCTGCTGAGGAGTAG
>TU7335
NNNGACATGATAGAGGAGCCAAAGTGATTGCTACTGGCTTTGCTGATTTAGGATTCGATGTAGATATCGGACCTCTGTTCCAGACCCCTCTGGAGGTAGCCCAGCAAGCTGTGGATGCTGATGTTCACTGTGTGGGGGTCAGCACCCTGGCAGCCGGCCACAAAACTCTGGTTCCAGAACTCATCAAAGAGCTGAGGAACCTGAATCGCCCCGATATCCTTGTCATCTGTGGTGGAGTCATTCCTCCCCAGgACTATGACTTCTTGTTCAAAGAGGGAGTCAGCAGTATCTTCGGTCCAGGAACTAGAATCCCACAAGCAGCTGTGGAGGTTATAAACAACATCGAGAAACACCTGGAGAAGAACCGATCAGCAATGTAAGCAGAAACGGAAAAGAgat
>TU7345
acaacatCAGAGCTGGGCAGCAAGGCTTATCAGTGGCTTTCGACTTGCCCACTCATCGAGGCTACGACTCCGACAACCCCCGTGTACGTGGCGATGTGGGCATGGCTGGTGTTGCTATTGACACCGTGGAAGACACAAAGATGCTGTTCGATGGGATTCCTTTGGAGAAGATGTCTGTTTCCATGACAATGAATGGAGCTGTGATTCCCATCCTGGCCATGTTTATCGTGACTGGAGAGGAGCAGGGCGTCCCTCTGGAGAAACTGACAGGGACCATCCAGAACGACATCCTGAAGGAGTTCATGGTCCGAAACACATACATCTTCCCACCTGAGCCCTCCATGCATGCCATTGCTGACATATTTGCGTATACTTCGAAGCACATGCCCAAATTTAACTCAATTTCTATCAGTGGGTACCACTTACAAGAAGCTGGAGCTGATGCCATCCTTGAACTGGCTTACACCTTGGCCAATGGTTTGGAATACTGCAGGACTGGTCTGAAGGCGGGCTTAAGCATTGATGAATTTGCTCCCAGG

Function

symbol description
mut Predicted to enable methylmalonyl-CoA mutase activity. Predicted to be active in mitochondrion. Used to study methylmalonic acidemia. Human ortholog(s) of this gene implicated in methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency. Orthologous to human MMUT (methylmalonyl-CoA mutase).

NR:

description
PREDICTED: methylmalonyl-CoA mutase, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004494 methylmalonyl-CoA mutase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0031419 cobalamin binding molecular_function

KEGG:

id description
K01847 MUT; methylmalonyl-CoA mutase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004143 True 870 mRNA 0.53 6 35344663 35355767
TU7335 False 399 lncRNA 0.49 3 35345118 35348267
TU7345 False 539 TUCP 0.55 3 35354621 35414446

Neighbor

gene id symbol gene type direction distance location
AMCG00004142 clic5,LOC103355727,LOC105017981 coding downstream 28298 35301103 ~ 35316365 (-)
AMCG00004136 supt3h coding downstream 257707 35080605 ~ 35086956 (-)
AMCG00004135 NA coding downstream 275175 35060062 ~ 35069488 (-)
AMCG00004133 NA coding downstream 395060 34946874 ~ 34949603 (-)
AMCG00004134 NA coding downstream 420130 34920611 ~ 34924533 (-)
AMCG00004148 NA coding upstream 5418 35419864 ~ 35423230 (-)
AMCG00004152 ccm2 coding upstream 62112 35476558 ~ 35495919 (-)
AMCG00004153 xkr6,LOC107552036,LOC108258067,LOC107734270 coding upstream 105577 35520023 ~ 35531270 (-)
AMCG00004154 LOC107723320,LOC107746102,LOC107701509,LOC107561941,LOC105897758,LOC105895740 coding upstream 228081 35642527 ~ 35643105 (-)
AMCG00004156 LOC107676230 coding upstream 270809 35685255 ~ 35691933 (-)
G5929 mut non-coding downstream 437690 34903366 ~ 34906973 (-)
G5869 NA non-coding downstream 446756 34872613 ~ 34897907 (-)
G5870 NA non-coding downstream 466444 34877500 ~ 34878219 (-)
G5805 NA non-coding downstream 1052167 34292269 ~ 34292496 (-)
G5721 NA non-coding downstream 1717156 33626309 ~ 33627507 (-)
G6009 NA non-coding upstream 58422 35472868 ~ 35475341 (-)
G6030 NA non-coding upstream 253591 35668037 ~ 35668538 (-)
G6034 NA non-coding upstream 258005 35672451 ~ 35672679 (-)
G6037 NA non-coding upstream 259500 35673946 ~ 35676120 (-)
G6068 NA non-coding upstream 405812 35820258 ~ 35820483 (-)
AMCG00004132 NA other downstream 380778 34954706 ~ 34963885 (-)
G5871 NA other downstream 452050 34891901 ~ 34892613 (-)
G5801 NA other downstream 1209063 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 1313116 34015368 ~ 34031547 (-)
AMCG00004116 NA other downstream 1426342 33875441 ~ 33918321 (-)
AMCG00004178 NA other upstream 1081326 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 1354602 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 1369297 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 1909564 37324010 ~ 37381953 (-)
G6441 NA other upstream 1953539 37367985 ~ 37368822 (-)

Expression


Co-expression Network