AMCG00004148


Basic Information

Item Value
gene id AMCG00004148
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35419864 ~ 35423230 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004148
GTCGCCGTGAAGGAGTTTGGTGCCAACATGGACAGAGTTCCTGCCTCAGTTCTGTCCGACGCGGCTGCAGCATCTCCCGAGCCCCCCCAGCCAGGCAGTGTCATTTACCAGGACACGCTCCAGGACACTGTGCTCCAGTTGCTACTAGAGATTGACCCCTGCCTGTCTGAGAACAGAAATGGTTCAATCATTCTGCTGATGCAGGAGGTACTGCATGCGGTGTTCTGCTCTCCAAGCCTTAGGGTGGACATCAGGGAAGTCGACAGGCTGAGGGCCGAAGACCGCATGATCAGTAGGATTGCGCACTCCATAGCCAGCGAGCTGAGGGAAGGCACCACCAACTCTCAGCTGAGTCACAGAGTCAAGGAGAAAGACAAGGTGCTTTTCGAGCAGATCTGTCGGAGTGTCATCGACAAGGTCCTGAGCCAGGCACCTGGGAACGCCTCCGTCAGGCACATAGACCCGGTTCTGGATGACAACCAGTTGCTAGGAGACTTGTCGGACTTGGATGAAGATCGCCTCAGCTCCACCTCTGACCAGAGTGACTTTGAGCATGAGAACCAAATCAAGAACATCCTGGGGACACTGTTGTGGCGATTGTGCCCCGAGACAGAGTGCGTCGGAAGGGAGTCCCTCTGTAGGCGGTTGGACTTGAAGTACAAGCTGATGGTGCAGGTGGTCCGAGAGATCGAGAGGTTGCCGGACCAGGAGAAGTTCTTCAGGAAACACAGGGTGCTGCGGATGTCTTGTCTCCAGGAGGTGCAGCAGGCTCTGAAGGTGAAACACTTGTCTGTGGATGCCCTGTCTGAAGACCCGGCCCTGCAGCAAATCGTGGCCAGCACGATCGCCTGCAAGCTGCTGTCCTCCGCCCAACCCTTGCCCATCAAACTGCTGGAAAGTGGGGAGGCTTCATCCACCTCCAATGAGTCTCTGGTGTCATCCACCTCCAATGAGTCTCTGGTGTCATCCACCTCCAATGAGTCTCTGGCGTCATCCACCTCCATTGAGCCTCTGGCGTCATCCACCTCCAATGAGCCTCTGGCGTCATCCACCTCCAATGAGCCTCTGGCGTCATCCACCTCCAATGAGCCTCTGGCGTCATCCACCTCCAGTGTGCCTCTGGCATCCGTCAGCCAGTCTGAGATTCCCACTGCGGACCTGCTACCACAGCCCGGAGCAGCAGCCCTTGTCGAAGGGGTGGAGCCTTTACATATCCCAACAGctGCAGAGGCACCGGGCCGTACAAAACTCCCCATGATGAAGTGCTTCCGTCGTGCCTGCTCAAGGTTCTTCCCCCGTCTCTCACGGATGTTCTGTTCAAAGGTGGCACCCATGTGAACCTCCGTCCCTTATGGAAAGGACCTGCCACAACAGCGCGGAGCAGCAGGCCCTGCCATAGGGGCGCAACCTGTGACACTGCCAGGACAAAGATCCTCTTTTTAAACGAAATGGTATTGGGGCCAAAGTGGCCATAATACTTTGGATGTGTGCACACTATATTGGTTCACAACTTTGCAGGCATTCTATATCAATTTACTTGTGTACTGTATTGGATCAAAATTTTGCTTGAATATTATATCAGTTTGAATGTGTACTTTGCTTAATTTGCTGACAAGCCTATAATTGGCTTCATAATTTGATTCACAAATTGAGTTTCATAGTACAGTAGAATACAAATCCCTTGCATCAAATAGATAAAAACATATGTGTTGTATCAGGTGACACTTTATGACTCTCTGGGGACGAACTACTGTAGTTAATTATCTGAGTTGTACCGTACTATGAAACTCAATTTATCAGTTGTTCACATGACTCAACTGGTGGGGCATGACTAGAGGTGTCCCATAAGTGTAAACCATGGACACAGTGTGATCAATACTTAATAAGTAATCTGTAATGTCTTGCTCGTGGTTAAGTCATTCATTAATGTGTTGCTTGAGAAAAGGGTTCGCACTGCTGCTTCCGCCCTGTTTTCCCGCCCCGTCCAGTTGAGTCACGTGAAcaaccaatatagtacacacacaaaccaatatattatgcacacaaaccaatatatataaCCAAAAGTTGTGAACCAATATAGCATGCATGCAATACGAAGTATTAAGATGGTCAACTTGAACACATTATGTGCCACGAAATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004148 True 2144 mRNA 0.51 4 35419864 35423230

Neighbor

gene id symbol gene type direction distance location
AMCG00004146 NA coding downstream 6116 35407247 ~ 35413748 (-)
AMCG00004147 NA coding downstream 25528 35392028 ~ 35394336 (-)
AMCG00004144 mut coding downstream 44702 35374824 ~ 35375162 (-)
AMCG00004142 clic5,LOC103355727,LOC105017981 coding downstream 103499 35301103 ~ 35316365 (-)
AMCG00004136 supt3h coding downstream 332908 35080605 ~ 35086956 (-)
AMCG00004152 ccm2 coding upstream 53328 35476558 ~ 35495919 (-)
AMCG00004153 xkr6,LOC107552036,LOC108258067,LOC107734270 coding upstream 96793 35520023 ~ 35531270 (-)
AMCG00004154 LOC107723320,LOC107746102,LOC107701509,LOC107561941,LOC105897758,LOC105895740 coding upstream 219297 35642527 ~ 35643105 (-)
AMCG00004156 LOC107676230 coding upstream 262025 35685255 ~ 35691933 (-)
AMCG00004155 NA coding upstream 273392 35696622 ~ 35720187 (-)
G5929 mut non-coding downstream 512891 34903366 ~ 34906973 (-)
G5869 NA non-coding downstream 521957 34872613 ~ 34897907 (-)
G5870 NA non-coding downstream 541645 34877500 ~ 34878219 (-)
G5805 NA non-coding downstream 1127368 34292269 ~ 34292496 (-)
G5721 NA non-coding downstream 1792357 33626309 ~ 33627507 (-)
G6009 NA non-coding upstream 49638 35472868 ~ 35475341 (-)
G6030 NA non-coding upstream 244807 35668037 ~ 35668538 (-)
G6034 NA non-coding upstream 249221 35672451 ~ 35672679 (-)
G6037 NA non-coding upstream 250716 35673946 ~ 35676120 (-)
G6068 NA non-coding upstream 397028 35820258 ~ 35820483 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 5418 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 455979 34954706 ~ 34963885 (-)
G5871 NA other downstream 527251 34891901 ~ 34892613 (-)
G5801 NA other downstream 1284264 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 1388317 34015368 ~ 34031547 (-)
AMCG00004178 NA other upstream 1072542 36495772 ~ 36540841 (-)
AMCG00004189 NA other upstream 1345818 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 1360513 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 1900780 37324010 ~ 37381953 (-)
G6441 NA other upstream 1944755 37367985 ~ 37368822 (-)

Expression


Co-expression Network