AMCG00004149


Basic Information

Item Value
gene id AMCG00004149
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35357422 ~ 35359998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004149
ATGACTGGCGCAGCAGCACAGCTGGGCAGACCATTTGGTGCAGCAGCCCAGCTGTTCAGACAGATTCGTGCAGCACAGCTGTATCCGGTCAGCCACGCCAGACTCTTCCGGACAGCGACCTGCTCACAGGGGGCCGAGCTGCACCCACAGTGGGTAGCCTTGGCAAAGAAGCAGCTCAAAGGCAAAGACCCCGAGGATCTCATATGGCACACGCCTGAAGGCATTCAGATCAAGCCGGCGTACACTCGGGAAGACTCCGAAAATGTCCCGAATGAACTACCAGGCGTGCATCCTTACACCAGAGGTCCCTACCCCACCATGTATACCTACAGACCATGGACCATCAGACAGTATGCCGGCTTCAGCACTGTGGAGGAAAGTAATAAATTCTACAGAGACAACATCAAAGTCCGCCTGAATGGCTGTGCTGCTTCCCCAGCCCATCTGACCGGCTGTGCTGCTGCACCATTCGTTCTCACCAGCTGTGATGCCGCGCCAATCAGTCTGAACGGCTGTGATGCTGTGCCAGTCCGCCTGAACGGCTGTGCTGCTTCCCCAGCCCATCTGACCGGCTGTGCTGCTGCGCCATTCGGTCTCACCAGCTGTGATGCAGCGCCAATCAGTCTGAAGGGCTGTGATGCTGTGCCAGTCCGCCTGAACGGCTGTGCTGCTTCCCCAGCCCATCTGACCGGCTGTGCTGCCGCGCCAGTCGATCTCACCAGCTGTGATGCTGCATTAATAGGTCTAAACAGCTGA

Function

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004149 True 756 mRNA 0.58 2 35357422 35359998

Neighbor

gene id symbol gene type direction distance location
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding upstream 108497 35239232 ~ 35248925 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding upstream 146548 35207531 ~ 35210874 (+)
AMCG00004139 NA coding upstream 184390 35172476 ~ 35173032 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding upstream 379789 34964466 ~ 34977633 (+)
AMCG00004128 NA coding upstream 523307 34820168 ~ 34834115 (+)
AMCG00004145 NA coding downstream 38382 35398380 ~ 35406953 (+)
AMCG00004150 NA coding downstream 91073 35451071 ~ 35455522 (+)
AMCG00004151 NA coding downstream 97156 35457154 ~ 35458783 (+)
AMCG00004157 NA coding downstream 282998 35642996 ~ 35684393 (+)
AMCG00004163 NA coding downstream 475775 35835773 ~ 35837710 (+)
G5875 NA non-coding upstream 7395 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 50473 35301103 ~ 35306949 (+)
G5867 NA non-coding upstream 461761 34894102 ~ 34895661 (+)
G5808 NA non-coding upstream 975323 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 1064921 34292271 ~ 34292501 (+)
G6002 NA non-coding downstream 95678 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 105864 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 460257 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 801608 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 1135842 36495840 ~ 36520594 (+)
AMCG00004138 fkbp1b other upstream 487102 34852863 ~ 34870320 (+)
G5642 NA other upstream 2226236 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2955039 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4462595 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 5050247 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 392452 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 667281 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 901790 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1327632 36687630 ~ 36697885 (+)
G6314 NA other downstream 1414003 36774001 ~ 36774523 (+)

Expression


Co-expression Network