AMCG00004150


Basic Information

Item Value
gene id AMCG00004150
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35451071 ~ 35455522 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004150
agataATCTCACAACTGTTGCAGCTGCTGTAAGTATTGGATCGAATCCATTAAGGGAATGTAAAGAATATTTCTTCTTTGCCATTTACTGTCACAGTTCCGATCTTggaggttttattttcagtggatTAATTACAAGGAAGTGTAAGGAAGGACTATCTTTTATAagcatttttgtgattttggATTTCGTAAAGAACCTAATGAAGAAGGAAGCCTAAAACAGCAACTCATACCATTTTTTCTCCCTTATTCCCTGAATTGTTTTTGATCATAAGTATTGCTGTTTTGTGCCTTCAAATTGTGGATTCCCATTATGATTGTATATGTTATCTGTACTGAGTGCACTGCTAACTGGATTACAGTCTATTATTAAGGGATATTCCTAGAAATAATACGCCAAATTGGTCACAGTAGGCAAACCTAACTCCTGTTGCCTTACAGAAGCTTGTGTCTAATCCAGTTGGGATCACTTTCTTCATCCACTCATTTAGTAATGAACATcctacagtaaaaataaaaagcccccAAAACACTAATTATACCAAATGTGTGGATTTACAGGAAGAGGGCTTTAAGGGCTGTAGACAAAAGAAACTCCTATAAGGAAACCAAACCTTAGagatacatttgcaaaaaactgagctagtttgtttttttggttttggccTTGCTGTGAGTCACTACTGTCAATGGATACAATGTCGCTGCCAAAGATCAGTGTGGAGGAAGCCGATGGGACTGGACAGGATGGCCCAGCTGTCACTCACGATGACCACCTGAGGAGCCTGAAGGCTCTGACCGAGAAGCTGAGACTGGAGACCAGGAGGCCCTCCTATCTGGAGTGGAAGGCCCAGTTGGAGGCCCACAGCTCCAGGGACCACAAGACCCGGGAGGAGGGAGCCATGCCTAAAGAGGAGCGGAAAGCCAGTGAGGAGATTGTGGGCTCTCTGAGGCATCCCAAGCAGCACCTGCAAAGCAGCAGCATTGTCAGAGAGGAGAGCCTGCCCTCAGGGAACCTCAAGGGCTTTGGGAGCATCGACGAAGCACTCAGCTGGCTCAGGAAGGAATTGaCTGAAATGCGTCTCCAAGACCAGCAGCTGGCTCGACAGCTGATGCGTCTGCGCAGCGACATCAACAAGCTGAAGATCGAGCAGACGTGCCACCTGCACCGCAAGATGCTCAACGACGCCACCTACGAGCTTGAGGAGCGGGACGAGCTGTCCGACCTGCTGTGCGACTTCCCTGTCACCCCCGGCTTCAGCCTCTCCACGCCACTCAAGCTCATCGGTGTCACCAAAATGAACATCAACTCCCGGCGCTTCTCCCTCTGCTAGTTGGCCAGCTGGCCAGTCTATCAGAGCAAGGGGCCCCCGGAGGCTCCCACAGGTCCTTGGAGCCACACCATCCCAAAAGGCCCTCATCGCCACATCTCCAGGGCTCTGTTCTCCATCTGTGCTGAGAAACCAAGAGAAATCCGTGCACGTCCTGTTTCTGTTCTCAACGTGAGGTACAGAGGTAATCCAATAGAGTAGAAATAGGTGATAGTACCTGCATGCTTAATACATCAGCTCCCAAAAACTTTTATTATATCAGCACAACATGATCCTTCTGATGAAGACCTCCTGTGGATTGGAAATTTGAAATCCTTGCATGTCGGTatagtaaatgttttttggaGCACCAGGTTTATGAGTGCTGGTTCAATCTACTTCTTCGACTCATCACAAAGTCTACATGTTCACTTCCCCACTTCACTCTCTGCAGGCGGGGAACCACAGGTCTGTGTGCAGCCGGTCTTAGAGAGCACAAACTCAGTTATGTGATATGGGAAGGTGTTTTAAGTCATTCTTAAAGCATCTTTAGATATGGTTGCGTACAATTTGTAATTGTGTCTGTAATGCCttaatattgaattgaatttgtgtattgtttgtaaagAGTTGTAAATTGAACCCTCCGGAGGGACAGGGGCAGCTGAATTGTCGGGGTTTGACCCCATGTTGTGACAATCTTGTCAAGTTCACAGTATTAGTAGAAAATGAGAATCGGACTGATTCTTTTCATGacatttccctttatttttcttttatttttgtaattgctgaaatctaatttcattttttaaatataattttagaaaataaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004150 True 2149 mRNA 0.45 2 35451071 35455522

Neighbor

gene id symbol gene type direction distance location
AMCG00004145 NA coding upstream 44118 35398380 ~ 35406953 (+)
AMCG00004149 NA coding upstream 91073 35357422 ~ 35359998 (+)
AMCG00004141 LOC107717234,LOC107594081,LOC107552040,LOC107653853 coding upstream 202146 35239232 ~ 35248925 (+)
AMCG00004140 runx2,LOC107378134,LOC102312376 coding upstream 240197 35207531 ~ 35210874 (+)
AMCG00004139 NA coding upstream 278039 35172476 ~ 35173032 (+)
AMCG00004151 NA coding downstream 1632 35457154 ~ 35458783 (+)
AMCG00004157 NA coding downstream 187474 35642996 ~ 35684393 (+)
AMCG00004163 NA coding downstream 380251 35835773 ~ 35837710 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding downstream 612058 36067580 ~ 36073621 (+)
AMCG00004159 NA coding downstream 658979 36114501 ~ 36128960 (+)
G5875 NA non-coding upstream 101044 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 144122 35301103 ~ 35306949 (+)
G5867 NA non-coding upstream 555410 34894102 ~ 34895661 (+)
G5808 NA non-coding upstream 1068972 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 1158570 34292271 ~ 34292501 (+)
G6002 NA non-coding downstream 154 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 10340 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 364733 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 706084 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 1040318 36495840 ~ 36520594 (+)
AMCG00004138 fkbp1b other upstream 580751 34852863 ~ 34870320 (+)
G5642 NA other upstream 2319885 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3048688 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4556244 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 5143896 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 296928 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 571757 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 806266 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1232108 36687630 ~ 36697885 (+)
G6314 NA other downstream 1318479 36774001 ~ 36774523 (+)

Expression


Co-expression Network