AMCG00004159


Basic Information

Item Value
gene id AMCG00004159
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36114501 ~ 36128960 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004159
GGAGTGGGCAGGCTGTGCGGGAATTGCGCTTTCAATTGTGCGGAGGATTTGGTTCACATccatacatcaataaataaatgaaatgtgtgtatggAACCAGCTGCGTAGAGACATTGCAACACGGTGCACTAAATGAGAGTAACAAGAAGAAATGCGAAACGTAGCCTCTCAGAAGGGAGACTCAGCCCTGCACTGATGATGGAGCACAAAGTGAGGAGCCCGCCGGCCTCCAGTGTCTCCAGCAAGAGGAAGACTTCAAAGCCCAGACAAAAGGGCAAAACACAAGGTCTCAGGGGTTCCAGAGTGGCTTTGTCCCGGAGGAGCCCCCCGAGGACTCTGTGAGCGAGTCGCCCTGCTCCTCCATCACTTCCTCCAGCCAGGCCAATGGCACAGACGACACGGCCCAGCCCCTCAGGAAGTCGGCCTCTTGGTTGGAGACGAAGCGGGGAAAGCACTGCACAGaaccagagaaagagaaagGAAGTCAAGAGGAAAGATGGCACCTGCAGATTCTCGATAAAGGACGAGTGACATGTCCTAAGTGTAAAGCTGTTGTTAGGAAAACCGTTGAAGGGTTGAAGAAGCACATGACAAACTGCAAAATGaaTCCCTTTACATGTCAACACTGTGGAAAGCAGCTGAAATCTCTGACTGGGATGAAGTATCACGTCATGGCTGACCACAATAACTTGccAACATCTGACGATGCAAATGGATTGGACAACCACTCTCTTAAAGATAGATTAAGAAAGGTGCTGAAGAGAATGGGCAagttaaaatgcacaaaagagGGTTGTACAGGCAGTTTCACCAGCATCATGGGTTACTTGTACCACATGAGGAAGTGTGGCAAAGAAGAGTCAGAGCTGGAGAAACTTGTTCTGAACTGCAAGCACTGTGGAAAACCCTACAAGTCAAAGGCTGGTCTTGAGTACCACCTGAAATCTGAGCATGGCCCTACTCCCCTGAACAGTGAGGAGGAAGACGTGAAGGCACAGAGGGAGCCCAATCCAGAGAGGACAGCCTGTGGCCGGGTGAAGAGGAGGTCTGCCCAGGTGGCGGTGTTCCACCTGCAGGAGATTGCAAGCGAGGAGCTGCTGAAGGAGTGGCCTAAGAGGAAGGTGCAGCAGGACCTGGTGCCTGATGACAGGAAGTTAAAGTATGCCCGACCTGGGCTGCCAGCTTTCAGTCAAGAAGTCCTTCGGAAATGGAAGAATGAAGTGAAATTGCACAGAAAAGTGCATTGTCCTAATGAGGGCTGTAATTCAGTTTACACCAGTGTATCTGGACTGAAAGCCCACCTTGGGCTCTGTTCTAGGGGTGACTTTGAGGCAGGGAAGTATAAATGCTTGATATGTGATAAAGAATTCAGCTCAGAGAGTGGGGTGAAGTATCACATCAACTCCATTCATGCTCAGGACTGGTTTGTCGTGAGCTCAAAAACAAAGAGCTTTGAAAAGATGCTGAAGACTAAACCGAAGGAAGACAAAAGGCAGGCCCCTCCAGAGAAAAAGCCATCCCTCAGGTTCACCACAGCTCAGAAGCGGCGGCAGGAAAAGAAGCCTGTGCCAAGCTCCTCCGCTGGCCTGAGGATGAGGCGGGAGGCtctgcagaagaagaagaagcagaaggaaaaggagaaggaCTGCTATGACTTCAGTGGCAGTGACAGCcgcagtagcagcagcagctgtgggagcagcagcagcagcagcagcagcgactCTGAACAAGAGGAGCAAGAGGCTCCCAGACAGGACAAGTGGGCTCTGAAGAGGCCTGTCGCAAGGTCTGGGGCAGGCCAGCGAGCAAAATAAAGTCCTCTCTTGCCTTCAAAACAAGTCACCCTAGTGGCTACCACGTTTACAAGTCCGTAGATTTAGGTTGTCTTTTTAAAGCAACAgtaaacattgcttttttttttcttaaaaagggAAAGTATGAAATTTACCCGTTAACCCATTAGTTTAACCAATTTTAGTATTCTCATAACAGTGATGGAGCGATCACTGCTTTAGCtcttggtttttatttttgtgaataaaACGCACACGAAGTGTGTATAGCCCCAGAttagtttgctttgttttgttttgctagtTCTATCCAGTAACTTtcttgtacatttatttttttagacttGCAGTATCCAGGGTTCTCTCCTCTTCATCCTCACTAGTTCCATACCCAAATACCCAAAACCTTTCAGCTGTTTTGACAGTAATGTGTCTACATTTCAGTGACTTCTAAATACCAAGCAAAACTATTTGCTTCACTAGCCAAATGTATACTTATATCTTATTCACAGTCTGGCACCATGTGGGGATAGACATGATGCTGGAGGTCAATAAAGACGGGGTGTAGGACATACAGGTGCAAACATGGCGGAGATTTAGTGGAAGGAgagtgatttattatttacacagtGTTCCAgtgaacaaaccaaaaatacaaaaatcaaacccTAGCTCCTGTGAGCCTGAAATATGCATTTAACAGTTCCCTCTCTCAATAGGTGCTAATAACGACAAGATAAAAATGCAACTAGTTCAAGTCCATGATCAATGTTCTTGTCTTTCCACCCTTAAGCACTCTTTCTACACTCAGGCTCTTTTCCTGCCTCAAGGATCCAGGGAGGTATAACACAACCTAAGCTTCAGGACATTGATTGTTCAGGTGGTATAGCAAGGCTTAGTAACCAGTTGTGTGTGCCATCCACTGTGTGGGTTACAAAACCAAGCACGGGCCCACTCTTATGTCTGTACTCTATATAAATGGAATCGGCTGCTAACAAGATTTTAATCCAAGTTTTAAAGCATTATTCCCCTGCAGGTTCTGTCGATGAGGTAAAGCATAGTTAGTTTTCTATATggtgctgtattttattgtacctCCCCTGGCTTTTTAGAGTAACCATGAGTACATTTTGGTCATGTATTAAAAGTTTGAATGGTTTAATGTTTCCCCATTATGTTGGTGCCACCCATTTTAGcaagaaaatgaattgaaagAACCAGTTTACCAATATGTTACAtgcagagagaaggacagagatgCACAAAGGTAACactaaagttaaaacaaaagagttaaacatgtttttgtaattaaacagTCATGTTTATAACACCACATCAATCCTATAGAAAAACCAAAGTGCTGCGTGTCCTTGGAGAGAAACTGTGTACAGGCAGCTATTAGTTACTAGCTACACAATGTGTGGAGTAACTTAATATTTACCCTGTTTATATCATGTGGttgtccttttatttgttttgattactgaaatatttatcatAAACCTAAACAGTAtgtaatatgattttaaaaaaatgttttagccCTTTGAGTGTGTTACATGTGGTTTTCTACAATATCCTACCctattaggttttattttttttaattgtaatacttTGTTCTTGGTTTAACTCATCCAGTGTCTATGTTTCTCACAGAAATTAGTAACTGTCCTTTGTAatgatgtaattttgtttacaatatttatttatattatagaGCCCACTTGTGTGTTGCATTTAATCAGTGTTGTCTTTTCCCTGTTATTTGGTGCACAATAACAAACTCAATAACTACAAGGACTGTGAGTTGTAATACAAATGGAAGGATTTCCCTGTACTTTAACTGGTGCATTAATATTGTGCATGCAATACTCTAAATTGTGCTGCTGTCTGACTAAATAAGAAGTTATGAATGCTTTTAATATGGACCTTcaagtattaaatatttacctaatgagtataatacagtgtaacCAAACTCCTGCATTGTGTTCAAAGTAAAATGGTTAGTAGACTGTTTTTGGGCATCCCATGCTCTCACTTGTATTGCATATattgtacaacattttttttaaacctgtgttTTATAGTTTGTGTTTCAGGTTTTGAATACTAACCCTTAATATGCCACAGATTCTCTCAAGACTCTTGTTTATCTTTATTTGTTGGGTTTTATCTGTTATTGTGGCCTGATTAATCTTTTGGATTAAGTGGTGTCTCTCTATCTatgaatatacacaaacatacatccATA

Function

GO:

id name namespace
GO:0006913 nucleocytoplasmic transport biological_process
GO:0051169 nuclear transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004159 True 4056 mRNA 0.42 12 36114501 36128960

Neighbor

gene id symbol gene type direction distance location
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding upstream 40880 36067580 ~ 36073621 (+)
AMCG00004163 NA coding upstream 276791 35835773 ~ 35837710 (+)
AMCG00004157 NA coding upstream 430108 35642996 ~ 35684393 (+)
AMCG00004151 NA coding upstream 655718 35457154 ~ 35458783 (+)
AMCG00004150 NA coding upstream 658979 35451071 ~ 35455522 (+)
AMCG00004165 NA coding downstream 5046 36134006 ~ 36158549 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 58533 36187493 ~ 36211948 (+)
AMCG00004166 NA coding downstream 108846 36237806 ~ 36252898 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding downstream 219613 36348573 ~ 36390512 (+)
AMCG00004173 msra,LOC106571446 coding downstream 326031 36454991 ~ 36469024 (+)
G6067 NA non-coding upstream 294018 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 647846 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 658614 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 764474 34899636 ~ 35350027 (+)
G6102 NA non-coding downstream 32646 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 366880 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 397708 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 424944 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 427146 36556106 ~ 36557331 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 69219 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 348321 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1244181 34852863 ~ 34870320 (+)
G5642 NA other upstream 2983315 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3712118 32400405 ~ 32402383 (+)
AMCG00004167 NA other downstream 132828 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 558670 36687630 ~ 36697885 (+)
G6314 NA other downstream 645041 36774001 ~ 36774523 (+)
G6328 NA other downstream 732587 36861547 ~ 36891746 (+)
G6369 NA other downstream 870397 36999357 ~ 37000158 (+)

Expression


Co-expression Network