AMCG00004160 (LOC106571404,LOC106607809,LOC105897019)


Basic Information

Item Value
gene id AMCG00004160
gene name LOC106571404,LOC106607809,LOC105897019
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36027279 ~ 36045282 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004160
GCCGCCTGTATTCCAGTTTTACTCAGCAATGGCTGGGAGCTGCCGTTTTCTGAGATCATTGACTGGAGCAAAGCAGCTGTCATTGGAGATGAGAGACTTTTACTACAGatTCCTTCAATAACCAGATCTGTGGACCATGACAAAATATTGGCACTCAGGCAGCAGACTCAGTTCCTTTGGGATGCCTATTTTTCTTCGGTAGCAAAAATAGTATTAACTACATTAGAGATAATCCACGATCGAATCCATTCACACATagcaagaaataaaattatgtgGAATTCCCTGCCAGGTGGTCTGTACATTTTACCACAGTTTTCTACCAATTCGGAAgactttccattttattattcattgctCGGAAAAAGTCCATCCCAGGAGTTCACAGCTGTAATACAGGCTGTTACCCCTTTCCAGTCACAGTCGCAGCCCATTGTCAAACTGATAATTGCTGTTGCCAAATCCAAGTACTGCGCACAG
>TU7461
AGGCCGCCTGTATTCCAGTTTTACTCAGCAATGGCTGGGAGCTGCCGTTTTCTGAGATCATTGACTGGAGCAAAGCAGCTGTCATTGGAGATGAGAGACTTTTACTACAGatTCCTTCAATAACCAGATCTGTGGACCATGACAAAATATTGGCACTCAGGCAGCAGACTCAGTTCCTTTGGGATGCCTATTTTTCTTCGGTAGCAAAAATAGTATTAACTACATTAGAGATAATCCACGATCGAATCCATTCACACATagcaagaaataaaattatgtgGAATTCCCTGCCAGGTGGTCTGTACATTTTACCACAGTTTTCTACCAATTCGGAAgactttccattttattattcattgctCGGAAAAAGTCCATCCCAGGAGTTCACAGCTGTAATACAGGCTGTTACCCCTTTCCAGTCACAGTCGCAGCCCATTGTCAAACTGATAATTGCTGTTGCCAAATCCAAGTACTGCGCACAG

Function

NR:

description
PREDICTED: exostosin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004160 False 480 mRNA 0.43 4 36027281 36045282
TU7461 True 482 lncRNA 0.43 4 36027279 36045282

Neighbor

gene id symbol gene type direction distance location
AMCG00004163 NA coding upstream 189569 35835773 ~ 35837710 (+)
AMCG00004157 NA coding upstream 342886 35642996 ~ 35684393 (+)
AMCG00004151 NA coding upstream 568496 35457154 ~ 35458783 (+)
AMCG00004150 NA coding upstream 571757 35451071 ~ 35455522 (+)
AMCG00004145 NA coding upstream 620326 35398380 ~ 35406953 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding downstream 22298 36067580 ~ 36073621 (+)
AMCG00004159 NA coding downstream 69219 36114501 ~ 36128960 (+)
AMCG00004165 NA coding downstream 88724 36134006 ~ 36158549 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 142211 36187493 ~ 36211948 (+)
AMCG00004166 NA coding downstream 192524 36237806 ~ 36252898 (+)
G6067 NA non-coding upstream 206796 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 560624 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 571392 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 677252 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 720330 35301103 ~ 35306949 (+)
G6102 NA non-coding downstream 116324 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 450558 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 481386 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 508622 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 510824 36556106 ~ 36557331 (+)
AMCG00004158 NA other upstream 261099 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1156959 34852863 ~ 34870320 (+)
G5642 NA other upstream 2896093 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3624896 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 5132452 30887995 ~ 30894827 (+)
AMCG00004167 NA other downstream 216506 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 642348 36687630 ~ 36697885 (+)
G6314 NA other downstream 728719 36774001 ~ 36774523 (+)
G6328 NA other downstream 816265 36861547 ~ 36891746 (+)
G6369 NA other downstream 954075 36999357 ~ 37000158 (+)

Expression


Co-expression Network