AMCG00004161 (LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919)


Basic Information

Item Value
gene id AMCG00004161
gene name LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36067580 ~ 36073621 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004161
GTTGACTATGCCTTCATTGTCTGGCACAGCTTCCCAGACCGGATAGTTGGTTATCCTGCCCGTAGTCATTACTGGGACAGCAGCAAAGGTCGATGGGGCTACACCTCCAAATGGACTAATGAGTACTCCATGGTGCTCACTGGAGCTGCGTTTTATCACAGGCAAGTACAGAAGGCATGGCTATACTATCACTACTTGTACACTCACTACTTACCAGCCAGCCTTCTCAGCATGGTGGACCAGATGGCCAACTGTGAGGACATCCTGATGAATTTCCTGGTGTCTGCAGTCACCAAGCTCCCACCCATCAAAGTTACCCAGAAGAAGCAGTATAAGGAGACAATGATGCAGCAGGGCTCCAAGACCTCGCGCTGGGCAGACCCGGACCACTTTGCACAGCGGCAGACCTGCATGAACTCCTTCAGCAGCTGGTTTGGGTTCATGCCGTTGCTGCACTCACAGATGAGGCTAGACCCTGTCCTGTTCAAGGACCAAGTGTCCATCCTGCGAAAAAAGTACAGGGACATCGAAAGGCTTTAG

Function

NR:

description
PREDICTED: exostosin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004161 True 540 mRNA 0.52 3 36067580 36073621

Neighbor

gene id symbol gene type direction distance location
AMCG00004163 NA coding upstream 229870 35835773 ~ 35837710 (+)
AMCG00004157 NA coding upstream 383187 35642996 ~ 35684393 (+)
AMCG00004151 NA coding upstream 608797 35457154 ~ 35458783 (+)
AMCG00004150 NA coding upstream 612058 35451071 ~ 35455522 (+)
AMCG00004145 NA coding upstream 660627 35398380 ~ 35406953 (+)
AMCG00004159 NA coding downstream 40880 36114501 ~ 36128960 (+)
AMCG00004165 NA coding downstream 60385 36134006 ~ 36158549 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 113872 36187493 ~ 36211948 (+)
AMCG00004166 NA coding downstream 164185 36237806 ~ 36252898 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding downstream 274952 36348573 ~ 36390512 (+)
G6067 NA non-coding upstream 247097 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 600925 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 611693 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 717553 34899636 ~ 35350027 (+)
G6102 NA non-coding downstream 87985 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 422219 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 453047 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 480283 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 482485 36556106 ~ 36557331 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 22298 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 301400 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1197260 34852863 ~ 34870320 (+)
G5642 NA other upstream 2936394 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3665197 32400405 ~ 32402383 (+)
AMCG00004167 NA other downstream 188167 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 614009 36687630 ~ 36697885 (+)
G6314 NA other downstream 700380 36774001 ~ 36774523 (+)
G6328 NA other downstream 787926 36861547 ~ 36891746 (+)
G6369 NA other downstream 925736 36999357 ~ 37000158 (+)

Expression


Co-expression Network