AMCG00004163


Basic Information

Item Value
gene id AMCG00004163
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35835773 ~ 35837710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004163
ATGCAGGCCAAGAAGAGGTACCTGCTTGTGTCTCTAGGGGCCTGTCTTCTGCTGATTGCCTACCTTGGGGGATTGCAGATTGGAGAGttccagcaccagcaccagcacctcTATAAGGATTCCCAAAGCCAGAATCTGCACCGGCAGCACTGGCCACAGTGGATTAACCCTTTAAGCACCTACCTGGATGGGGACGAGCATGAGGAGGATGATCCTCGTCTCCATCAGCAGCACCCCTCCCCACGAGAGAGGCGCGAGATCAGGAACAACGTCTACAAAAGCAGGAAGTGCAGGATGGACACGTGTTTTGACTTCAGCCTCTGCCAAAGAGGTTTCAAGGTGTACATCTATCCCCTGCAGAAGGGAGAGAAGGTCTCGGAGAGCTACCAAAAAATCACCACAGCAATCGAGGAATCTCGATTTTACACCACTGACCCAAGTCGGGCTTGTCTGTTTGTCCTCAGCATTGACACACTGGACAGGGACCAGCTTTCTTTTCAAACCACTGAAACCAGTGAAACCAAACTGTACTGGACAGACATTTGCTAG

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004163 True 549 mRNA 0.52 2 35835773 35837710

Neighbor

gene id symbol gene type direction distance location
AMCG00004157 NA coding upstream 151380 35642996 ~ 35684393 (+)
AMCG00004151 NA coding upstream 376990 35457154 ~ 35458783 (+)
AMCG00004150 NA coding upstream 380251 35451071 ~ 35455522 (+)
AMCG00004145 NA coding upstream 428820 35398380 ~ 35406953 (+)
AMCG00004149 NA coding upstream 475775 35357422 ~ 35359998 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding downstream 229870 36067580 ~ 36073621 (+)
AMCG00004159 NA coding downstream 276791 36114501 ~ 36128960 (+)
AMCG00004165 NA coding downstream 296296 36134006 ~ 36158549 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 349783 36187493 ~ 36211948 (+)
AMCG00004166 NA coding downstream 400096 36237806 ~ 36252898 (+)
G6067 NA non-coding upstream 15290 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 369118 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 379886 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 485746 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 528824 35301103 ~ 35306949 (+)
G6102 NA non-coding downstream 323896 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 658130 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 688958 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 716194 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 718396 36556106 ~ 36557331 (+)
AMCG00004158 NA other upstream 69593 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 965453 34852863 ~ 34870320 (+)
G5642 NA other upstream 2704587 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3433390 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4940946 30887995 ~ 30894827 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 189569 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 424078 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 849920 36687630 ~ 36697885 (+)
G6314 NA other downstream 936291 36774001 ~ 36774523 (+)
G6328 NA other downstream 1023837 36861547 ~ 36891746 (+)

Expression


Co-expression Network