AMCG00004165


Basic Information

Item Value
gene id AMCG00004165
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36134006 ~ 36158549 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004165
caTAGCTGCTGTGTCAGGTGGATGTGCATGTTTTCAGCTCATGTTAAACCTTCAGAAAATCATTAAGATGTATTTGTCTTATCCAGATATAATGCTGTAGGACGTTTCTTCTGTGGACGTACTGTGTACTACTTGACTGCCAGGGAAAGGGACGAGGGAACTTAATGGCAGCTGCTGCCCAGGAGGAGTGCAGAAGCAACGCTATGGGTGTGCCTTCAGAACTCAACCTCCAGGGACAGTCTGCCACTGAGCAAGCAGGCCCGGCCCGCAGTGAGTGCCCAAAGAAGAGTGACCGAGCCCCAGGAACGGACGCACACAGTTCAGCCTTCCTGGAGTCAGGAGAAGAGAAGCCAATGAGTGAAGGGATGTCACAGGAGGACCGCACAAGCGTTGACCTGCCAGTTGAGAATGGCACAGGAGACAGCACTCAGTATCGTGAAGAGTCAGCGGACTGCTCTGGACAGCAACAGAACAAGAAGGAAGGTTCCTGCCAGATAGAAGACAGCCAGCAGTTGGTCCCTGAAGACACCCCTGTTGAAGACTCCTCTTCTGCTACCCCACAGTCAACAAAGCTTAGCAGATCAAGAAAGAACCCTCTGCCCAAGAAACTGCTCACTCCACCCCAGGCATCAGGCCCACAAGCCAAACAGACCACAAAGACCCCCCAGCCGGCGAAGGAATGCAAGAAGAGAGGCAGAAGGACTAAGGCAGAGCTGCTTGCACTGCAGCTTCACACATCGCTGACCAGCACCCCAACACCAGCAGAAAAGAAAGACCTGGATGATATCATCAGTGATGAGACGACCCCAGGCGGCAGGCCCAAGAGGAGAGCAGCCAAGGTCGCTTTGCAGTACCTGCACAACCTGGCTGAGGAGATGGGTGGCCCCACCTGGTCTGAGAAAACTTCGGATCCAGCAGAGCCAGACTCGGGCAAGGGCCAGAAACGCGGGAGGGGGAAGAAGAGGAAGACCCTGGATTATGACAGCTCCGACGACGTAAGCAAGGATGCCGATTTCGTTCTTCCAAACACTCAGGAGATGGACATAGAATCGGAGGACGAAGAAGACATGGAGGGCTTTGCCACTGAGGTGCCAGAAAAGGGTTTCCGACCACGGAGCACAGCCGCTGCTAATAAACCCAAATATTTTGGCATGGCTGCAAACGGTTTGCCTAACAATGTGATGGGACCTGTGTGGAATTGCACTCATGTCACTAAAGAGTTCCGTGAACAACACTGTGCCTCTTGGGCTTTTCCTGAATGGATTCCTTCTGTAAAGGACTGGATTTTTTTGTCCTCCAGTGAGAGTGAGAAGTATTTACCCAAAGAGGAAACATCTCCACCCTTCAGGATAGAACGAGAGGGTGTTAGTGAAGAAGACAACCTCCACAGAATAAAAAGATTTGAATCCCTGTCCTCCCACCATGAGCGCTGGGACCTGACGTTTTTTGTTGGCGGTCCTGTGTGGTCTATGGAGTGGAGCCCCTGCCAGGAAGGCTCGTCTGCCAGCCAGTATGCAGCCATATACAGCAACAGGGGAATGGATGATAGACACAGGCTTGCGGGTACCCACTCTGAGGCGGCGCTGCTACAGATCTGGCATGTGGGTGAGCTACAGCATGATACATGCCCCAGGACCAAAGCATCCTTTGCATACGGAATTGCCTTGGACTATGGCTGTATATGGGATATGAAGTGGTGTCCAAGCGGAGCATGGGAACTGCCCTCAACTAACAGGAAGGTTCCTCAGCTGCCAAGGCTTGGGCTGCTTGCTGCCGCTTTTTCTAATGGAAAAATTGCTGTGTTCAGCCTTCCACACCCAGAGGCCTTGGCTGCTTACAGAAAAACTCACAGGAAAGGAGCAGTAAAAGAAGAACCTCTGATTTGCCAGGTGCGCTGCACTGCTGTTTTGAAAGTGGGGTCGATACAAGCTGGCAATAGCTCCCAGTGTGGGCAGTGCTTCAGTCTGGACTGGCTACCAATGAAACCACATAACACCTTGGCGGCTGGTTTCTACGATGGCACGGTGGCCTTGTGGAACCTGGAAACCAAATCTTTGCTACAGCGAGTGCGCCTGGCTAATGGCAGTTTAACCCTGTATCCATATCACTGCTTTATAGCTCATGACCATGCGGTCCGCGTGCTTACCTGGTGTAAGGCCAGCAGTAATTTAATAGTCACTTCCAGCGAGGACAGGAAGGTGAAATTCTGGGATCTCCGGAGGACTTACGAGCCAGTTAATGTCATCAAACGCTACCTCACCACCGAGATCTCATGGCTGCTGCACTGGTCcggagtgtgtgtgtcacaggaGAACTGTTACGCTACATTCGGGCAAAATGGCATCCATTACCTGGACGCTGGTTACTTCGGATTTAAGCCGTATTTTGTTGCTCCAAGGAGAGGAACAGTGTGGAGCATATCAGGCTCAGACTGGCTGAATACCTGCGTGACAGGAGACACTACGGGGGAGCTGATCATGATGGTGCTCTCAGACATGACTCTGAACCCCAACAACATCAAGCGGCCCATGGACCGCAGATTTCCTGTCTGCAGAGCCGAACTTGTTCAGTACGAAACGGATTCAAAAGCACAAGACACGGACACTGATGATTCCAGACTTAAAGCAGATATTAGGGAGCCCCGGACATACagtgaagcaattaaaaaatactaccTCCTGTTTCACGATACAGATATGAGGACCTTTAAGAATGCCCTCAAGCGAGATCCCATGAAGCACATGTACGCCACAGAAACCAAAGGTGCTCTGCCTCTTGACAGGATGCCTCTTGACTCCTTGCATAAGGTCCGTTTCAACCCCAACCTAGGATCGCACAGCTGGGTCCTATCAGCTGGGCAGGCCGGCATCGTCCGAGCGCACTGCCTGAGAGGGATGAACAGTCCTGTCGTCAGCAAACTGGTGCATGAGAGCCAAGCGCAGTTCAACACCATGTATCAACCTCAGGGAGCCACGGCCAACGAGAGCACGGTCACGGCGGTGAACCGCAGTCTGGTGGGAATCATGGAGGTGCAGTGACGTGGCCCTGGGGGACCGCTTTAACGGCCCTCTGGGACTATAGTACTGCAAGACTGAGGGAAGCCAGAGTACCTGAAGAAATAGAGAACCagggatttgtttatttttttaagaaatgccTTCCCTCATGAGATGCATCCCATAATGTCTGGATTCTAGTATAGTTGACGGTCTCATTAAATCGTCACCCGTTTTAAttattgtagttttgtttttatatttaaatt

Function

GO: NA

KEGG:

id description
K15200 GTF3C2; general transcription factor 3C polypeptide 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004165 True 3265 mRNA 0.51 18 36134006 36158549

Neighbor

gene id symbol gene type direction distance location
AMCG00004159 NA coding upstream 5046 36114501 ~ 36128960 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding upstream 60385 36067580 ~ 36073621 (+)
AMCG00004163 NA coding upstream 296296 35835773 ~ 35837710 (+)
AMCG00004157 NA coding upstream 449613 35642996 ~ 35684393 (+)
AMCG00004151 NA coding upstream 675223 35457154 ~ 35458783 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 28944 36187493 ~ 36211948 (+)
AMCG00004166 NA coding downstream 79257 36237806 ~ 36252898 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding downstream 190024 36348573 ~ 36390512 (+)
AMCG00004173 msra,LOC106571446 coding downstream 296442 36454991 ~ 36469024 (+)
AMCG00004174 NA coding downstream 343277 36501826 ~ 36502116 (+)
G6067 NA non-coding upstream 313523 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 667351 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 678119 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 783979 34899636 ~ 35350027 (+)
G6102 NA non-coding downstream 3057 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 337291 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 368119 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 395355 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 397557 36556106 ~ 36557331 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 88724 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 367826 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1263686 34852863 ~ 34870320 (+)
G5642 NA other upstream 3002820 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3731623 32400405 ~ 32402383 (+)
AMCG00004167 NA other downstream 103239 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 529081 36687630 ~ 36697885 (+)
G6314 NA other downstream 615452 36774001 ~ 36774523 (+)
G6328 NA other downstream 702998 36861547 ~ 36891746 (+)
G6369 NA other downstream 840808 36999357 ~ 37000158 (+)

Expression


Co-expression Network