AMCG00004167


Basic Information

Item Value
gene id AMCG00004167
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36261788 ~ 36278234 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004167
ATGTATATAAACATCCAGCAAGGAGACATCGAGTCCAATCTCCATCAACAGGACTCCTCGGACAGAGGACCTTATACTTCAAGACTATCCAGCATGAAGGCAACTCCTCTGGTCTTGCTTATTGCCAGTGTACTGCTATTGTCGCATATTCCTCCAAGTGTCTGCCGTCCGAGGGACATGGGCATGTTTGACGGGCACGGTTACAAGAACCAGCTTGACGAGGTCTTGTTAAAGGCGGGCGATCATGCGATTTCCTACCTCATGGGTGAGAAGATCCTGAGATATTTGCAAGGAAAAACAAGGTTTCAGAAGAGTCTGGCTCAGCTGCCTCCGGAGCACCTCCAGATGCTGACGCCGCTCTCCGCTCAGGACCTGGCGCACCTGGGGCGCAGCTGGCCGCTGTTGGGCGGGGGAGGGCGCTCTGTGGAGGAGGGCAACAGCCTGGAAGAACCGGGGGAGATGTCCAAGCGGGCTGAAGACCCCCCGATCTCCATTGATCTCACCTTCCACCTTTTAAGAAATATGATCGAAATGGCGAGGATCCAGAGCCAGAAGGAACAAGCGGAAATAAACCGCAAATATTTAGACGAGGTTGGCAAGATCATAGACACTGCCAAGGCATCCAACATAGAGCGCACGGAGCCTGGGTACGAGAACATGGACCACTTCATCATCAACACTGACGACATCGCCGACATGCTGAGAACAATAGATTTCCAAACAGAGTTGCCTCTCTTTGAAGTGAATGGAAAAGTCAAGTGGGATTATAGATCAGAGGATGTATTCAAGATCACGGCAGTGCTGTGCTTTAGAGAGATGAGCATGACAGAGATGGTGTGGAAAGGGAGTGTGGTAGAGAAGCAGGAACTAAACCCTGAGAACTTGCTTGTTGCTGAAGTCTCCCAGGGTGACGCCGCCGAGGAGGGCTTTGAAGCTGAGGAGGGTGGGGTGGCAGAAGACGAGGTGTCCCAGCTGAGCGTCGAGGGCGACGGCAGCAGACTGGATACAGCCGGGCTCCTCTCTGCAAATCAAATCACGGTGATTGACAAGAGCACACCCACAACTTGCTCCAGAAGTTTCCTGAAGGATGTCAAATTAAAAGTTGAGAGTGACGTCATTTTCCAGCATCATCTTCATACCGACAGCACACCTCACTTGGGGGGCTTCGAATTCTTCACCACCCCGCTGGTGGCTGTTGGCTTTTTTATTATGGAACTTGTGATGGACTCCGGTCGGTCACCCACCTGCAGGAAGACGGCCATCTGTGGCTCCTCCATGGACTGGATTGCGGACTCCACCAGTTTGGAGGCTCCCTCCAAGTGGTCCCCGTGCTGGCGAATGAGGGAGCGGACATGGGCAAGCTTCTCGTCCTGCTCCTGGCCGATACACAGCACCagctctttcttcttctcctccaggatggcataG
>TU7524
ggtgttcctaataatcctttaggtgagtgtatatataggaCACCCTCCTGTATTCAAAAGTGTGTAAATCATGCTGATATGAGCACATAGGGAAAACTCAGCATGTATGTAATATGTGTGAAAATTTTGATTATGCTGCAAAAGTGTgtgaacaaatatttgaatttgaagaCTAAGATCATAGAAATCTAGGAAACTCCAAATGTATACACaccaaaaatgtaacaaatgtgtttgttttaagagaTATGGGTTGGTAAGAAGCTGATTATAactaactgtaaaataattatattgtttcttaTCTTCCACAGGGCAACAAAGAATTGATCAAAAAGATCATAGACACTGCCAAGGCATCCAACATAGAGCGCACGGAGCCTGGGTACGAGAACATGGACCACTTCATCATCAACACTGACGACATCGCCGACATGCTGAGAACAATAGATTTCCAAACAGTCTCCCAGGGTGACGCCGCCGAGGAGGGCTTTGAAGCTGAGGAGGGTGGGGTGGCAGAAGACGAGGTGTCCCAGCTGAGCGTCGAGGGCGACGGCAGCAGACTGGATACAGCCGGGCTCCTCTCTGGTAAGAGAACTGTCCCAGCTGCCAAAAAATAAAGCCAGGCACCCACTCTCCCCACAGCAAATCAAATCACGGTGATTGACAAGAGCACACCCACAACTTGCTCCAGAAGTTTCCTGAAGGATGTCAAATTAAAAGTTGAGAGTGACGTCATTTTCCAGGTAATCACAGAAGAGCTGCAATGCTGTCTGCTTCCTTTCTCTTCTGATAAAATTCTGTGAAGCTCCTCTTACTGATATTACTGTACCAAAACTTTTATGTGGCACGTCACTTATCAAATCTGTGggtaataaaagtaaaaac

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004167 True 1428 mRNA 0.53 7 36261788 36278234
TU7524 False 888 TUCP 0.40 3 36272192 36274930

Neighbor

gene id symbol gene type direction distance location
AMCG00004166 NA coding upstream 8890 36237806 ~ 36252898 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 49840 36187493 ~ 36211948 (+)
AMCG00004165 NA coding upstream 103239 36134006 ~ 36158549 (+)
AMCG00004159 NA coding upstream 132828 36114501 ~ 36128960 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding upstream 188167 36067580 ~ 36073621 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding downstream 70339 36348573 ~ 36390512 (+)
AMCG00004173 msra,LOC106571446 coding downstream 176757 36454991 ~ 36469024 (+)
AMCG00004174 NA coding downstream 223592 36501826 ~ 36502116 (+)
AMCG00004176 slc25a27,LOC107553473 coding downstream 385568 36663802 ~ 36669648 (+)
AMCG00004180 NA coding downstream 464393 36742627 ~ 36746065 (+)
G6102 NA non-coding upstream 95918 36161606 ~ 36165870 (+)
G6067 NA non-coding upstream 441305 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 795133 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 805901 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 911761 34899636 ~ 35350027 (+)
G6224 NA non-coding downstream 217606 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 248434 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 275670 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 277872 36556106 ~ 36557331 (+)
G6247 NA non-coding downstream 287336 36565570 ~ 36593153 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 216506 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 495608 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1391468 34852863 ~ 34870320 (+)
G5642 NA other upstream 3130602 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3859405 32400405 ~ 32402383 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 409396 36687630 ~ 36697885 (+)
G6314 NA other downstream 495767 36774001 ~ 36774523 (+)
G6328 NA other downstream 583313 36861547 ~ 36891746 (+)
G6369 NA other downstream 721123 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1554389 37832623 ~ 37847720 (+)

Expression


Co-expression Network