AMCG00004173 (msra,LOC106571446)


Basic Information

Item Value
gene id AMCG00004173
gene name msra,LOC106571446
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36454991 ~ 36469024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004173
CAAAGCACCATTTTAACGGAAATAAGACGGTACCACCATTCCCCGAGGGACTACAGATGGCCATATTTGgcatgGGCTGTTTCTGGGGAGCTGAGAGGAAATTCTGGCAGCAGAAAGGAGTTTATTCCACCCATGTGGGCTATGCTGGTGGACTAACTCCGAATCCATCCTATGAGGAAGTGTGCACAGgTAAAACTGGCCATGCCGAGGTTGTTCGAGTTGTGTTTGCACCTGGAAAGACAAGCTTTGATAAACTGTTGAAGGTGTTTTGGGAGAACCATAATCCCACACAAGGGATGCGACAGGGCAACGATGTCGGAACCTCATATCGTTCTGCTGTCTACACTTACTCGCAGGAGCAAATGGACACAGTCCTCAGATCTAAGGAGGAATACCAG

Function

symbol description
msra Predicted to enable L-methionine-(S)-S-oxide reductase activity and peptide-methionine (S)-S-oxide reductase activity. Predicted to be involved in cellular response to oxidative stress. Predicted to be active in cytoplasm. Orthologous to human MSRA (methionine sulfoxide reductase A).

NR:

description
Peptide methionine sulfoxide reductase

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0008113 peptide-methionine (S)-S-oxide reductase activity molecular_function

KEGG:

id description
K07304 msrA; peptide-methionine (S)-S-oxide reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004173 True 398 mRNA 0.49 4 36454991 36469024

Neighbor

gene id symbol gene type direction distance location
AMCG00004170 ift172,LOC105901225,LOC107716708 coding upstream 64479 36348573 ~ 36390512 (+)
AMCG00004166 NA coding upstream 202093 36237806 ~ 36252898 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 243043 36187493 ~ 36211948 (+)
AMCG00004165 NA coding upstream 296442 36134006 ~ 36158549 (+)
AMCG00004159 NA coding upstream 326031 36114501 ~ 36128960 (+)
AMCG00004174 NA coding downstream 32802 36501826 ~ 36502116 (+)
AMCG00004176 slc25a27,LOC107553473 coding downstream 194778 36663802 ~ 36669648 (+)
AMCG00004180 NA coding downstream 273603 36742627 ~ 36746065 (+)
AMCG00004186 slc5a6,LOC107601523,LOC107690043,LOC103362495 coding downstream 279832 36748856 ~ 36765206 (+)
AMCG00004187 enah,LOC107553420,LOC102788251 coding downstream 321410 36790434 ~ 36873869 (+)
G6102 NA non-coding upstream 289121 36161606 ~ 36165870 (+)
G6067 NA non-coding upstream 634508 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 988336 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 999104 35455676 ~ 35455887 (+)
G5914 NA non-coding upstream 1148042 35301103 ~ 35306949 (+)
G6224 NA non-coding downstream 26816 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 57644 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 84880 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 87082 36556106 ~ 36557331 (+)
G6247 NA non-coding downstream 96546 36565570 ~ 36593153 (+)
AMCG00004167 NA other upstream 176757 36261788 ~ 36278234 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 409709 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 688811 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1584671 34852863 ~ 34870320 (+)
G5642 NA other upstream 3323805 33130120 ~ 33131186 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 218606 36687630 ~ 36697885 (+)
G6314 NA other downstream 304977 36774001 ~ 36774523 (+)
G6328 NA other downstream 392523 36861547 ~ 36891746 (+)
G6369 NA other downstream 530333 36999357 ~ 37000158 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 1363599 37832623 ~ 37847720 (+)

Expression


Co-expression Network