AMCG00004177 (rcan2,LOC108429336,LOC107675064,LOC107727622,LOC107602203)


Basic Information

Item Value
gene id AMCG00004177
gene name rcan2,LOC108429336,LOC107675064,LOC107727622,LOC107602203
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36575252 ~ 36577556 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004177
GAAAAGTTCGAGGCGCTCTTCCTAGCGTATGACGACCATGTGACATTCCAGTTGTTTAAAAGCTTCAGACGTGTGCGAATCAATTTCAGCAACCCCAAAGCAGCCGCCAGTGCCAGGATAGAGCTGCACGAAACACAGTTCAGAGGAAAGAAGCTAAAGCTCTACTTCGCCCAGGTGCAGAGTCCTGGCTCGGATGGGGATAACCTGCACCTGgcccccccccagccctccaAACAGTTCCTCATTTCCCCCCCTGCCTCGCCCCCTGTCGGCTGGCAACAGATAGACGATGCCACACCAGTCATTAACTATGACTTACTTTACGCAGTAGCTAAACTAGGACCT

Function

symbol description
rcan2 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Orthologous to human RCAN2 (regulator of calcineurin 2).

NR:

description
PREDICTED: calcipressin-2-like isoform X2

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004177 True 345 mRNA 0.53 2 36575252 36577556

Neighbor

gene id symbol gene type direction distance location
AMCG00004175 NA coding downstream 79801 36495101 ~ 36495451 (-)
AMCG00004171 NA coding downstream 230563 36340174 ~ 36344689 (-)
AMCG00004172 LOC106571444,LOC106607850 coding downstream 235774 36312921 ~ 36339478 (-)
AMCG00004168 dnajc5g,LOC103043078 coding downstream 275013 36288395 ~ 36300239 (-)
AMCG00004169 NA coding downstream 289844 36277958 ~ 36285408 (-)
AMCG00004185 NA coding upstream 68457 36646013 ~ 36663669 (-)
AMCG00004181 NA coding upstream 92759 36670315 ~ 36677129 (-)
AMCG00004183 NA coding upstream 100221 36677777 ~ 36681459 (-)
AMCG00004182 ptrhd1,LOC103399259,LOC106571548 coding upstream 107734 36685290 ~ 36691361 (-)
AMCG00004184 LOC102789059 coding upstream 120167 36697723 ~ 36721486 (-)
G6243 NA non-coding downstream 17921 36556106 ~ 36557331 (-)
G6241 NA non-coding downstream 20144 36553907 ~ 36555108 (-)
G6200 NA non-coding downstream 171866 36402392 ~ 36403386 (-)
G6199 NA non-coding downstream 173770 36400165 ~ 36401482 (-)
G6197 NA non-coding downstream 184746 36386362 ~ 36390506 (-)
G6309 NA non-coding upstream 188016 36765572 ~ 36765809 (-)
G6326 NA non-coding upstream 202922 36780478 ~ 36780691 (-)
G6374 NA non-coding upstream 334682 36912238 ~ 36920856 (-)
G6384 NA non-coding upstream 450472 37028028 ~ 37028244 (-)
G6437 NA non-coding upstream 738080 37315636 ~ 37318149 (-)
AMCG00004178 NA other downstream 34411 36495772 ~ 36540841 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 1160806 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 1611367 34954706 ~ 34963885 (-)
G5871 NA other downstream 1682639 34891901 ~ 34892613 (-)
G5801 NA other downstream 2439652 34132098 ~ 34135600 (-)
AMCG00004189 NA other upstream 191492 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 206187 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 746454 37324010 ~ 37381953 (-)
G6441 NA other upstream 790429 37367985 ~ 37368822 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 3264379 39841935 ~ 39849123 (-)

Expression


Co-expression Network