AMCG00004178


Basic Information

Item Value
gene id AMCG00004178
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36495772 ~ 36540841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004178
ATGgCAGTAGTTGCTGGTTTTGGTCCACTGGCATCCTTTATTGGTGCTGCAGAGGGTGTAGCTCTACAGGCTGACAACGGCCAGTTCCTCAGCTGTATTGAGCGAAGCTCTATTTATAACATAGAGGCTGCCAAGAGCACCAAAGACCCCTGGTGCAAATTCATAGTGGAGAAAGTCAATGATTTGAAAGTCCGTCTCAAAGATCAGAGAGGTGTTTATCTCAGTCGAATTAACAGGGGTGATGTCAACCATATCGAGGCAGCCAAGGCTATGCCTGATGTTTACTGTGAGTTCAGTGTTTTCAACAAGAATGGGAAAGTTGTTTTTAGAGCCGACAATGGCCTGTTCTTAAGCCGAATTTATCGGAGTAATCAGAACATTGAGGCTGCTAAAGAAGGTGTTGATGTATGTTGTGAATTTTCACCAAGTATTGGAGATGTTATCAGCCCCAAGTTTGAAATTGTTGATATAGATTTCGGCAAAATCCCAGACCTGAGTGACAAGCCCTCTGTGGTTAAAAGCGATTACTACATTAATGAAAGCAGTGTGAACCAATCCCACACCTTCAAACTAAACTGGCAGGACACAGTCACAGAGACCACGACCTGGACTCATACCTGGGGGCTGTCCACTACCGTGTCTTCTGATTTTAAGTTCTTAAGTGCCTCAGTCACCATCTCATACTCTGGAGAATATGGCACCAGCTCCTCAAAAGAGAGAACCATCTCCATGGCAGAAGAGACTACCATCACCATTCCTCCCAAAACCAAGATCATAGTGAAGCTGATGGTCAACAAGGATGATCATGCTGAGATTCCCTTCACAGCTACAATCAAGAAGACCAAGGCCAGTGGAGAGGTTGAGATGCTCACTGAGAAAGGCACCTGGAAGGGTGTGGCTTACGAAAATGTAAGGCTTAAAATCGAGGAAGCTGAAGTGTAA
>TU7632
TTCCACCTGAACTTGCCTTCTTTCCTCAAACCACAGAATAAAGCATATTGACTACTTCAAACCCAAACCTGAAGCTCTGTTTCTTcgacaatataaaaaaaaaatagcaacagCAACATATTACATAGAAAGTGTATCAAACGGATTTCTGCTGAGATTATCGTATGGTCCAAGCAAAAAGGGAtttgaaataaagactgaaaatggCAGTAGTTGCTGGTTTTGGTCCACTGGCAGGTCTAAGCAAGAAgggatttgaaaaaaaacactgaaaatggCGGTGGTTGCTGGTTTTGGTCCACTGGCATCCTTTATTGGTGCTGCAGAGGGTGTGGCTCTACAGGCTGACAACGGCCAGTTCCTCAGCTGTATTGAGCGAAGCTCTATTTATAACATAGAGGCTGCCAAGAGCACCAAAGACCCCTGGTGCAAATTCATAGTGGAGAAAGTCAACGATTCAAAAGTCTGTCTCAAAGACCAGAGAGGTGTTTACCTCAGTTGAATTGACAGGGGTGGTGTCAACCATATCGAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004178 True 942 mRNA 0.45 2 36537711 36539790
TU7632 False 534 lncRNA 0.43 6 36495772 36540841

Neighbor

gene id symbol gene type direction distance location
AMCG00004175 NA coding downstream 321 36495101 ~ 36495451 (-)
AMCG00004171 NA coding downstream 151083 36340174 ~ 36344689 (-)
AMCG00004172 LOC106571444,LOC106607850 coding downstream 156294 36312921 ~ 36339478 (-)
AMCG00004168 dnajc5g,LOC103043078 coding downstream 195533 36288395 ~ 36300239 (-)
AMCG00004169 NA coding downstream 210364 36277958 ~ 36285408 (-)
AMCG00004177 rcan2,LOC108429336,LOC107675064,LOC107727622,LOC107602203 coding upstream 34411 36575252 ~ 36577556 (-)
AMCG00004185 NA coding upstream 105172 36646013 ~ 36663669 (-)
AMCG00004181 NA coding upstream 129474 36670315 ~ 36677129 (-)
AMCG00004183 NA coding upstream 136936 36677777 ~ 36681459 (-)
AMCG00004182 ptrhd1,LOC103399259,LOC106571548 coding upstream 144449 36685290 ~ 36691361 (-)
G6200 NA non-coding downstream 92386 36402392 ~ 36403386 (-)
G6199 NA non-coding downstream 94290 36400165 ~ 36401482 (-)
G6197 NA non-coding downstream 105266 36386362 ~ 36390506 (-)
G6136 NA non-coding downstream 224954 36269114 ~ 36270818 (-)
G6129 NA non-coding downstream 238583 36256989 ~ 36257189 (-)
G6241 NA non-coding upstream 13066 36553907 ~ 36555108 (-)
G6243 NA non-coding upstream 15265 36556106 ~ 36557331 (-)
G6309 NA non-coding upstream 224731 36765572 ~ 36765809 (-)
G6326 NA non-coding upstream 239637 36780478 ~ 36780691 (-)
G6374 NA non-coding upstream 371397 36912238 ~ 36920856 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 1081326 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 1531887 34954706 ~ 34963885 (-)
G5871 NA other downstream 1603159 34891901 ~ 34892613 (-)
G5801 NA other downstream 2360172 34132098 ~ 34135600 (-)
AMCG00004120 NA other downstream 2464225 34015368 ~ 34031547 (-)
AMCG00004189 NA other upstream 228207 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 242902 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 783169 37324010 ~ 37381953 (-)
G6441 NA other upstream 827144 37367985 ~ 37368822 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 3301094 39841935 ~ 39849123 (-)

Expression


Co-expression Network