AMCG00004184 (LOC102789059)


Basic Information

Item Value
gene id AMCG00004184
gene name LOC102789059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36697723 ~ 36721486 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004184
ATGAGTGGCCTAGGGGAAAGTGCCCTTGACCCCACAACCCCAGAGTCTCGCAAGAGGAAAGGGTCACCATGTGATACCTCTGGACAGAGCGCGGAGAAGCGGCGGCGGGAGCTGGAGTGCCGATACATCGAGGAACTGGCGGAGCTGCTGTCTGCTAATATGGGCGACATCGACAGCTTGAGCGTGAAGCCTGACAAGTGTCACATCCTCAAGAGCACAGTGGACCAGATCCAGCAAATCAAGCGGCGCGAGCAGGagaaaGCTGCTGTTGCCGCCTTGATGTCAGCCGACGATGAAGTGCAGAAGAGCGACATCTCGTCCAGTAGTCAGGGGATGATTGAGAAGGAAGCCCTGGGACCTCTACTGCTTGAGGCACTGGACGGCTTCTTCTTTGTGGTGAATCGAGAGGGCAGGATCGTGTTCGTCTCAGAGAATGTGACTAACTATTTGGGGTACACCCAGGAGGAGCTTATGAGCTCCAGTGTGTACAGCATCTTACACGTGGGCGACCACAATGAATTTGTACGCAACCTGCTGCCCAAGAGCTTAGtCAATGGGGTTCCCTGGCCCCAGGAGTCTGCGGGAAGGAAGAGCCACACCTTCAACTGCCGCATGCTGAAGCGACCCCCCGACGAGATGGACTCGGAGAACCAGGAGGCACGGCAGCAGTACGAGATCATGCAGTGCTTCACTGTTTCCCAGCCCAGAGCGGTTCATGAGGAGGGCGAGGacctccagagcTGCCTCATCTGCATCGCCTGCCGTCTGCCCCGCCCACAGGTACCTGTCAACACAGAGTCCTTCATCACCAAACAGGATCCCACAGtGATGACCCATGGCACGGCCATTAGCCCGGTGTACCACTTCATTCTGAGTGATGGCACTGCTCTCAGTGCCCAGACCCGCTGTAAGTTCTGCTGCCCCCCCAACCCAGAAGTGCAGCCTTTCATCATGGGCATCCACACTATTGACAGGGAACACAACACTGCTAGCTCTCAGGAAAACACTAACCCAGGCCTTCTGCTGACACATGGGAGCCAGTCTCCAGCCCAGCCCTCCCGCTCTCCTGCTGTTCAGCCGGGCAGTGAACTCAGCCAAGCCCCGGGCATGGGCCTACATCTCAACAATGGTAACAACAGTACTACTGGTCCAGCCACACCCACCAGCCACTCGGCAGGGTACCTGACACCAAATCGAATGGGTGCCCAGCAGTTAAACAGCCCCTCCCCTCTCAGTAGCCCTTTGGGAGCTACTCCCACCTCCTTCATGTCACCCAGGCCCCCACGAGGCAGTCCCGGTCTAGGGGGGAGCCCTCGGGTGCCAGGCAACCCCTTTTCACCATCCACCCCCAGCCTGCACTCTCCAGCAGGAGCACCCAATGGCAGTGGCAGTCTCAGTAGACAGCAGTCAGGCTGCCTGGGAGAGTGTGCGAACACCCCCCTCAGCTTCTCTACGCCATCTCCGGTCCCACAGAGACAGACCACCACTCCTGCCAGCTCCCCCGTGCGCCACTCTCTGACAAAACCACCGGAAGGGCCGCCTGAGTGCAGAGAAGACAATGCCAAAACTCCTCAGCAGCACAGCAACCCCAAGCTTGCCCAGCTCCTTGACAACTGTGGGAGCCGACCCTCCGAAACAGACACAGCTCCGTCCTTACCTGCGCTTTGTCCAAACTCCCACAGCTCTCTAACAGAGCGCCACAAGATCCTGCACAGGCTCCTGCAGGATAACAGCCCCACCGAGCCTAGCAAGGGTGCCAGGAATGAATCTGAAATCAAGAAGGAATCCTCCACCAGTCTCTCCAGCACCAAGGAGCGCCAGGATCACCAGCTGTTGCGGATCCTCCTGGATACAGACGATAAGGACCTGGGGAACATCCCTCCTGCTGCCCTCAGCCTGGAGACGGTCAGAgtcaaaacagagaagaaatcAGAAGCTGAGCCCCCCTGTGCTGCCAACGCCTCCCCCAGGCCCAGTGACCCAACAACCAATCAGTATGGCGCTAACCTGGACACTCTGAATCAGCTGCTGCCCACGCTGGGAGGTGTTCTGGGGGCAAAGCCTCCTGAAGAGCAGTGCAACTCGCAGCCAAGAGAAGCCAGCATTCCCAGGGGCGTGAGTGTGAAGCAGGAGCTGCCCAACACACCGGGACGTGctTTCAGAGATGGCTCTGGCCTTCAGATTCAATCTCCCTTTGAGTTCTGTAGCCCCTCCACTCCCACCCAGGGCCAAGCGGACCCTTTCCAACCTCCCAAGGACAGTAGCCCTTTCCCAGAGCCAGGTCACATTAACACTTACAACACTGACACAGGGATGTCAAAGATGGAGCTGGCAGGGTCACAACACTTCCACCCTCGGCCCATGGCAGAACCAATGCCTTTTGATGGCAACCTGGGAAATGTAAACGAGGCCCATCCAACAGTCCTACCAGAGCAGTGTGTCCCCTGCCCGTTGGACGAGATGCTGTGCCCGCCCACCACCCCGGAGGGCCGCAACGATGAGAAGGCGCTGCTTGACCAGCTGGTGTCCTTCCTGAGCGGCACAGACGAGAGTGAGCTGGCAGAGCTGGACCGAGCACTGGGCATTGACAAGCTGGTGCAGGGCGGCTGCCTGGACAACCTCTCTCAGCGGTTCCCTGTCCAGCCCCCACAGTCCCCCATGCTAATGGAGCCAAAGCCCCCTGGATACCCACCACAGTTCCCCTCAGGCTCCCCCCAGTTCCCCCCCACAATGAACAGGACGCAGGGGCTGGGCTTCGGGGCCCCCAGGGGAGCGTTCCCTGGAGGAGTGGGCATGGGGCCACGGCCAGGCATGAGCCGACCTCCTGGCGTACCCAATCAGCTGAGGCTACAGCTCCAGCAGAGGCTCCAGGGCCAGCAGCAGCTGATGCAGCAGAACCGCCAGGCTGCAATGGGTCAGTTTCCAGGTGGAGGGCCTGTTGCCATGGGGATGCGTCAAGGCCTGCAGCAGCCTCAACTGCCGTCTCAGCCCCCTCTCAATGCTCAGATGCTGGCGCAGCGACAGAGAGAGCTCCTCAGCTTCCAGTATCGACAGAGGCAGCTCCTGCAGCAGAAGGCGATGGTCATGCGGCAGCACAGTTTGGGGGGGGCGCTCATGGGGGCCGCCCGGGGACCCAAAGGCcctcagcagctgcagcagttctCATACCCCCCTGGCTACAGCTCGGGGGCAGGGAACCCCCCCAATTCTCCAAATCCATTCAGCCCCATGGGAGGGCCTCCCGAAACCCAGCTCCCTGCCAGGGGCCCTATGACCAGCCAAGGCATGATGAGCGGTGTGCAGGGCCAGTTTGGGGGTGCTGTGAACTCCCCTGTCCAGCCCAACCTCTTCCAGCAGTTTGGAGGGCCAGGAATGGTCCAGCAGGCGGAGCCTCCTTTCCCTCCTGCACTCAGCCCCACCAGTCCCCTGCTGTCACCACAGATCTCGGCTTCCCAGAGTCCTCTTCTCCAGCAGTCTCAGGCACCACCTGGATACCAGTCACCTGACATGAAGAGCTGGCAACAAGGCAGTATGGGAAATAATAGCATGTACAACCAGTCAGGACAGACTCCACCCCAGGCTTTTGGCCAGCAAGGTGTGTACAACAACATGAGCATCACCGTGTCCATGGCAGGGGGCACGGGGGGTGTGGGCTCCCTGCCACCCATGGGACCACCTGTTGGCATGGGCAACAGCAACATGGGGAGCGTCACGTCCATGTGTAATGATCAGGTACAACAGGTTCAAGTTTTCGCCGATGTCCAATGTACCGTTAACTTGGTTGGCGGAGACCCCTACTTGAACCAATCTGGCCCAATGGGATCACAGAAGGGGGGGACTGGCACCCAGACCACCCAATCACAGCAGAAAAGCCTCCTTCAGCAGCTGTTAACTGAATGA

Function

NR:

description
PREDICTED: nuclear receptor coactivator 1-like, partial

GO: NA

KEGG:

id description
K09101 NCOA1, SRC1, KAT13A; nuclear receptor coactivator 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004184 True 3900 mRNA 0.59 18 36697723 36721486

Neighbor

gene id symbol gene type direction distance location
AMCG00004182 ptrhd1,LOC103399259,LOC106571548 coding downstream 6362 36685290 ~ 36691361 (-)
AMCG00004183 NA coding downstream 16264 36677777 ~ 36681459 (-)
AMCG00004181 NA coding downstream 20594 36670315 ~ 36677129 (-)
AMCG00004185 NA coding downstream 34054 36646013 ~ 36663669 (-)
AMCG00004177 rcan2,LOC108429336,LOC107675064,LOC107727622,LOC107602203 coding downstream 120167 36575252 ~ 36577556 (-)
AMCG00004194 NA coding upstream 199579 36921065 ~ 36960702 (-)
AMCG00004195 NA coding upstream 249905 36971391 ~ 37005951 (-)
AMCG00004196 cnih3,LOC107553421,LOC106607867,LOC107601529,LOC107732540 coding upstream 328515 37050001 ~ 37052773 (-)
AMCG00004204 NA coding upstream 556900 37278386 ~ 37288335 (-)
AMCG00004202 NA coding upstream 765471 37486957 ~ 37512998 (-)
G6243 NA non-coding downstream 140392 36556106 ~ 36557331 (-)
G6241 NA non-coding downstream 142615 36553907 ~ 36555108 (-)
G6200 NA non-coding downstream 294337 36402392 ~ 36403386 (-)
G6199 NA non-coding downstream 296241 36400165 ~ 36401482 (-)
G6197 NA non-coding downstream 307217 36386362 ~ 36390506 (-)
G6309 NA non-coding upstream 44086 36765572 ~ 36765809 (-)
G6326 NA non-coding upstream 58992 36780478 ~ 36780691 (-)
G6374 NA non-coding upstream 190752 36912238 ~ 36920856 (-)
G6384 NA non-coding upstream 306542 37028028 ~ 37028244 (-)
G6437 NA non-coding upstream 594150 37315636 ~ 37318149 (-)
AMCG00004178 NA other downstream 156882 36495772 ~ 36540841 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 1283277 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 1733838 34954706 ~ 34963885 (-)
G5871 NA other downstream 1805110 34891901 ~ 34892613 (-)
G5801 NA other downstream 2562123 34132098 ~ 34135600 (-)
AMCG00004189 NA other upstream 47562 36769048 ~ 36779062 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other upstream 62257 36783743 ~ 36787122 (-)
AMCG00004203 NA other upstream 602524 37324010 ~ 37381953 (-)
G6441 NA other upstream 646499 37367985 ~ 37368822 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 3120449 39841935 ~ 39849123 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location