AMCG00004196 (cnih3,LOC107553421,LOC106607867,LOC107601529,LOC107732540)


Basic Information

Item Value
gene id AMCG00004196
gene name cnih3,LOC107553421,LOC106607867,LOC107601529,LOC107732540
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37050001 ~ 37052773 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004196
TTGGTGTTACCAGAGTATTCCATTCATGCCCTCTTCTGCATAATGTTCCTATGTGCTCAACAATGGTTGACGGTTGGCCTGAACATCCCCCTTCTCTTCTACAATTCATGGAGGTACTTTCAGAGTCCCACAGACACGCCTGAGTTATTGTATGATCCAGCTTCAGTGATGAATGGGGACACTCTGAAGTTTTGTCAAAAAGAAGCCTGGtgcaagatgtttttttatgtactcTCCTTCTTCTACTATTTGTAC

Function

symbol description
cnih3 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Orthologous to human CNIH3 (cornichon family AMPA receptor auxiliary protein 3).

NR:

description
PREDICTED: protein cornichon homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004196 True 255 mRNA 0.43 2 37050001 37052773

Neighbor

gene id symbol gene type direction distance location
AMCG00004195 NA coding downstream 44050 36971391 ~ 37005951 (-)
AMCG00004194 NA coding downstream 89299 36921065 ~ 36960702 (-)
AMCG00004184 LOC102789059 coding downstream 328515 36697723 ~ 36721486 (-)
AMCG00004182 ptrhd1,LOC103399259,LOC106571548 coding downstream 358640 36685290 ~ 36691361 (-)
AMCG00004183 NA coding downstream 368542 36677777 ~ 36681459 (-)
AMCG00004204 NA coding upstream 225613 37278386 ~ 37288335 (-)
AMCG00004202 NA coding upstream 434184 37486957 ~ 37512998 (-)
AMCG00004201 NA coding upstream 472006 37524779 ~ 37528763 (-)
AMCG00004200 NA coding upstream 493602 37546375 ~ 37555523 (-)
AMCG00004207 vsnl1,LOC105894450,LOC103457788,LOC103023468,LOC103027217,LOC108440966 coding upstream 555248 37608021 ~ 37632390 (-)
G6384 NA non-coding downstream 21757 37028028 ~ 37028244 (-)
G6374 NA non-coding downstream 129145 36912238 ~ 36920856 (-)
G6326 NA non-coding downstream 269310 36780478 ~ 36780691 (-)
G6309 NA non-coding downstream 284192 36765572 ~ 36765809 (-)
G6243 NA non-coding downstream 492670 36556106 ~ 36557331 (-)
G6437 NA non-coding upstream 262863 37315636 ~ 37318149 (-)
G6445 tnfrsf21,LOC102783898 non-coding upstream 359916 37412689 ~ 37416547 (-)
G6462 NA non-coding upstream 445425 37498198 ~ 37498446 (-)
G6491 sf3b6,SF3B6,pm14 non-coding upstream 514558 37567331 ~ 37569793 (-)
G6574 NA non-coding upstream 1202236 38255009 ~ 38255371 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 262879 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 270939 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 509160 36495772 ~ 36540841 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 1635555 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 2086116 34954706 ~ 34963885 (-)
AMCG00004203 NA other upstream 271237 37324010 ~ 37381953 (-)
G6441 NA other upstream 315212 37367985 ~ 37368822 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 2789162 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 5012216 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 5323953 42376726 ~ 42531006 (-)

Expression


Co-expression Network