AMCG00004204


Basic Information

Item Value
gene id AMCG00004204
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37278386 ~ 37288335 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004204
GCACAATTTTGCACATAAGTATGGATCTGACTGACAATCAAACATCATCATACACAGGTTATATTCCACATTATCTTCTAAGAGATGACCCATTCTCCTCCAGACTGTCAAAGGAAGCAGACATTGTAGCTGCACTCTACATCTGTGTTATAGttaCAGGAAAACCATTCTTTATCATCTCAAGTTTTTCCCATCGCTGGCAGTTTGGATGGGAAGGCTGTTGGTTTTATGGCTGGGCCGGGTTTTTCTTTGGGTGTGGCAGCCTGTTCACAATGACCGCAGTCAGCCTTGACCGATACTTGAAGATCTGCCACATTAGATATGgtaCTTGGCTGAAGAGACACCATATGTTTCTCTGCTTGGGGTTCATCTGGTGCTATGCTGCCTTTTGGGCCTGTATGCCATTGATCGGATGGGGGAATTATGCTCCTGAACCTTTCGGCACATCTTGCACTTTGGACTGGTGGCTCGCACAGTCGTCAGTGTCTGGGCAGAGCTTTGTGATGTGTATCCTGTTCTTCTGCCTCATCTTTCCCATCatgataattgtattttcctatgtcaaaatcattttcaaagtcAAAGCCTCTGCAAAAGAAGTTGCCCACTTTGACACAAGAAATCAGAATAGTCACAttctggaaataaaattaacaaagGTGGCAATGCTAATCTGCACTGGGTTCTTGATTGCCTGGATCCCATATGCTGTTGTGTCAGTCTGGTCTGCCTTTGGGAGTCACGATTCAATTCCTATTCCAGCATCTGTAGTGCCCACTTTGCTAGCCAAATCATCAGCGATGTACAACCCTATCATATACCAGGTCATTGACTGTAAAAATGCCTGCACGAAGTCATCctgttttaaagttttgaagAAACGGAAACTCTACAACACTTCGAgCCATGCTGAGGATGTCCTC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG:

id description
K08385 OPN5; G0-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004204 True 923 mRNA 0.44 5 37278386 37288335

Neighbor

gene id symbol gene type direction distance location
AMCG00004196 cnih3,LOC107553421,LOC106607867,LOC107601529,LOC107732540 coding downstream 225613 37050001 ~ 37052773 (-)
AMCG00004195 NA coding downstream 272435 36971391 ~ 37005951 (-)
AMCG00004194 NA coding downstream 317684 36921065 ~ 36960702 (-)
AMCG00004184 LOC102789059 coding downstream 556900 36697723 ~ 36721486 (-)
AMCG00004182 ptrhd1,LOC103399259,LOC106571548 coding downstream 587025 36685290 ~ 36691361 (-)
AMCG00004202 NA coding upstream 198622 37486957 ~ 37512998 (-)
AMCG00004201 NA coding upstream 236444 37524779 ~ 37528763 (-)
AMCG00004200 NA coding upstream 258040 37546375 ~ 37555523 (-)
AMCG00004207 vsnl1,LOC105894450,LOC103457788,LOC103023468,LOC103027217,LOC108440966 coding upstream 319686 37608021 ~ 37632390 (-)
AMCG00004211 NA coding upstream 673942 37962277 ~ 37978111 (-)
G6384 NA non-coding downstream 250142 37028028 ~ 37028244 (-)
G6374 NA non-coding downstream 357530 36912238 ~ 36920856 (-)
G6326 NA non-coding downstream 497695 36780478 ~ 36780691 (-)
G6309 NA non-coding downstream 512577 36765572 ~ 36765809 (-)
G6243 NA non-coding downstream 721055 36556106 ~ 36557331 (-)
G6437 NA non-coding upstream 27301 37315636 ~ 37318149 (-)
G6445 tnfrsf21,LOC102783898 non-coding upstream 124354 37412689 ~ 37416547 (-)
G6462 NA non-coding upstream 209863 37498198 ~ 37498446 (-)
G6491 sf3b6,SF3B6,pm14 non-coding upstream 278996 37567331 ~ 37569793 (-)
G6574 NA non-coding upstream 966674 38255009 ~ 38255371 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 491264 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 499324 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 737545 36495772 ~ 36540841 (-)
AMCG00004143 mut,LOC107726528,LOC107697172,LOC107726757 other downstream 1863940 35344663 ~ 35414446 (-)
AMCG00004132 NA other downstream 2314501 34954706 ~ 34963885 (-)
AMCG00004203 NA other upstream 35675 37324010 ~ 37381953 (-)
G6441 NA other upstream 79650 37367985 ~ 37368822 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 2553600 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 4776654 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 5088391 42376726 ~ 42531006 (-)

Expression


Co-expression Network