AMCG00004205


Basic Information

Item Value
gene id AMCG00004205
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 37478830 ~ 37485632 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004205
atgaacacaagtCAAGGAAGTGTGATTGTCGACTTTCAGATGTATTTGAACGCACCCACCACAACTGAATTACTTACAGCTAAGACTATGACCATATCAACAAAGTTAAATGGCACTGTTTTACTTGAAACAACAGGAATAGCAAAACTTAAACTACcaccacttcctgtttgttaTTATTCGAAGACACAGTTGAATTGTACAATTGATGAATCATCAGTGGATAGTTCATCTTGGTGGTTGAACAAGAATGATAAAATAGATAATGTTGTAACTGGAAGTGAAACTGAAATTCTTCCAGGGTCAAGCTGTACTCAACTCACTCTGAAAAACGTAACAGCATACTGGGCAGGAACCTACATCTGCCAGTTTACAACAGGGATAATAACTCACAAAGCTCAGGCATTCCTTGACATAGCACTTTTACCAGACAGAGACAAGATTAATACACAAGTGGACCCACAGTTTCCAACCTGCAAGGACACACTCACAGGCTATAACGTGATGTTCACTATTGAAAACAGTACAGAGAATTATGATGTATCTATTAATATTCAAGATGTTTGCCAGGCAGACAGTGATTGGCCAACAACTAAGAGTTCTTTCAATGCAACACTACTATGTTCAGTAGACAAAGTGGGACAACGAACTAGGCAATGTGTTGCGAAGAAATGGGGGACAGAAATTAATAACTGTGTCAATCCCAAAATAAACAGTATGCTTATGACAGCATTGtcACTACAAAAAGGGCTTGGATCCATCTCAAATGTTGCTAAGGGATTGTTCAGTGAACTAAGAAATACTACAGATAATTCTGTTTCCATTAGCTCATATGCAGATATTGTAGCATCAGTAAATATCCTTTCTACCATTAATAGTGCTTCACAAGAAACCAAACTTCACGAGAGTGGTTTACATAAGTCACAAGAACTTATTGCATCTGATGTGTCTGTTAACTACCTTAAGGCAGTTGAAGGCCTTGTGGGACAAACAACACTCGCAAATCAGTCATTGAACATAACATTTCCAAATCTGGAATTTAAAGGATGTATTTTCACTAATGAATCCCAGTGTCTGAACAATACATCACTGTTTAATGTCACAGTAAACATGGGTAACCTGGAAGAAGGAGCTCtgaaaatacttgtttttaagTCACTGGGTAGCCTGTTACCAGACAAATCCATCCCAGAATTTAAAGTAGCCAGTGTGGTTCAATCAACCACACTATCAAATGCAACAGTAAATATCATCGAAATGGAATTCCAGATGACAGGTGAAAAGGAGCACAACCACGACATACAGTGTGTTTCCTGGAATTTCACAGAGAACAAATGGTCTGGTGAGGGTTGTCGGTGGGCTAAAACAAGTTCTGACACTCATGCcaaatgcatttgtaatcaCTTGACCTCTTTCTCTGTGCTCATGTCAAAATACCCTATCTCATTGCCTTTTATGGACGAACTTACTTACATTGGCCTGGGAGTATCTATATGTTCTCTGATCATCTGTCTTATAATAGAATTTCTAGTGTGGGATGCTGTGGTTAAATcaaatattgcacattttcGACACACAGCCCTTGTTAACATCTCTCTAAATCTACTAATTGCAGATTGTAGCTTCCTGGGCTCTTCATTTCCTGAAAAGATTTCCAAAACCCTGTGCTTTGTTCTTGTGATCGGAAAGCATTATTGTTACTTAGCTATGTTTTTTTGGATGCTGTGTCTCAGCACTATGCTTCTCCACAAactagttttcatttttcaccaGATGAGAAAGAGAGTACAAATGACAATTTCGTTTATTATAGGCTATGTATGCCCTGCAGTCATTGTGGCTGCCACATACTTCTACTTTAATCAAGACAAGAAAAGTGGGTATTATAGTGAAAAGACTTGCTGGTTAAATTATGATGGATTTCTAAAGGGGTCAATACATTCTTTTGTTTTACCTGTTggaatcattattataattaatttatttgccaTGGTTGTGGTCATTTCCAAGCTGTTGAGACCTTCAGTGTCAGAAAGCACCAAAGCGGACGACAAAGAGGCTCTTAAAAGCATTCTGAAAGCAGTGATCTTCCTGACACCAATTTTTGGATTAACATGGGCTTTGGGATTCTTCACATTCATGATTGACCTCACTGATGGAATACAAGCTAAGCTaggtctttttattttgcttactGGATGTTTTACAGAACAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004205 True 2217 mRNA 0.38 7 37478830 37485632

Neighbor

gene id symbol gene type direction distance location
AMCG00004206 NA coding upstream 143 37476289 ~ 37478687 (+)
AMCG00004199 NA coding upstream 33543 37427449 ~ 37445287 (+)
AMCG00004197 LOC107698324,LOC104954172 coding upstream 60883 37394102 ~ 37417947 (+)
AMCG00004193 LOC104951820 coding upstream 247622 37198923 ~ 37231208 (+)
AMCG00004190 NA coding upstream 539283 36936904 ~ 36939547 (+)
AMCG00004198 NA coding downstream 44130 37529762 ~ 37545788 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding downstream 81701 37567333 ~ 37570266 (+)
AMCG00004208 NA coding downstream 85171 37570803 ~ 37607222 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding downstream 603231 38088863 ~ 38186137 (+)
AMCG00004216 NA coding downstream 727750 38213382 ~ 38220095 (+)
G6428 NA non-coding upstream 134385 37344061 ~ 37344445 (+)
G6427 NA non-coding upstream 137816 37337526 ~ 37341014 (+)
G6421 NA non-coding upstream 160684 37315645 ~ 37318146 (+)
G6405 NA non-coding upstream 213326 37158176 ~ 37265504 (+)
G6383 NA non-coding upstream 450584 37028039 ~ 37028246 (+)
G6471 NA non-coding downstream 29250 37514882 ~ 37516498 (+)
G6573 NA non-coding downstream 769597 38255229 ~ 38255483 (+)
G6585 NA non-coding downstream 930966 38416598 ~ 38418776 (+)
G6586 NA non-coding downstream 980764 38466396 ~ 38466643 (+)
G6598 NA non-coding downstream 1130612 38616244 ~ 38616464 (+)
G6369 NA other upstream 478672 36999357 ~ 37000158 (+)
G6328 NA other upstream 587084 36861547 ~ 36891746 (+)
G6314 NA other upstream 704307 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 780945 36687630 ~ 36697885 (+)
AMCG00004167 NA other upstream 1200596 36261788 ~ 36278234 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other downstream 346991 37832623 ~ 37847720 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 2840778 40326410 ~ 40341235 (+)
G7094 NA other downstream 3973944 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 4724798 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 5203147 42688779 ~ 42691109 (+)

Expression


Co-expression Network