AMCG00004218


Basic Information

Item Value
gene id AMCG00004218
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38731508 ~ 38743566 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004218
ATGTACCGCGTTATTAAAGCACTCACCATCAGGTTCCCCGTCCTGGACCGACATAGCAAGGTTTGCACCATGGAAATGCAGAAAATCACCATGGAATCTAAGGCAGCAGCTTCCAACCTGCTCACAATGCTCCATTCTCTGTACCAGTGTGGATCTCTCTGCGATGTGACTGTCCAGACAGAACAGCAACACAAGGATGTTCACGAACATTTTTTCGTCCACAGAGTCGTCCTCGCTGCTTCCAGCAGGTATTTCAGGGAGCTGTTCCTCAGTGAGGAGCCGTCAGTTAATAAAGCACCCATGGTCATCTTGCATGATGTCAGCTCAGAAGAGTTTTCTACCTTCTTGGAATTTATCTACACTGCCAGACTTGAGATCGCACCAGATAAACTGCCCAGATTGAAAGATGTGGCAGAGAAGCTAGACTGTAAAGATCTGTTGGAAGCTTGTGAGGGTTCCATATCCTGCCACTGTCCGATTTTCAATCAGAATTCACTGCTAACAAGGATCATTTTGAGAAGCAAGAGCCCATCCTCTGACCAGGCCTCAGAGATCAAACTCAGAAAAGCAACTAGACGAGAGAATGACGATGAGCAAACCAAGGATAAAGCTGGTGCCACACAATTATCTGAAGATACTGAAAGAAGTAAACAAGAGGACAATGATAGGGAAGAGGGTGAATCTGGCCCAGATGTAGCAGAGACTCCTGTGATAAAACCTTTAGGGGGTTGGGAAACGAGGGTGGTTGTCCGTAAGTTACACCATGAAGAAAAGGGGAGCGACGGTGAAAGCCGGCTCGGGAGGCCTCACAGAAAGATCTTGAAATGGCGTGAAGAAACCTATATCTGTGACAAATGCAGCAAGGAATTCCAGCTTGTGAAGCAGTACCAGAGACACATGAGTAGAGAGCACAAGGTGAACGTGTTGGTGAAATACAGCTGCGACTTGTGTACCCAACTGGTGTCAAACCATCAGAACCTGCGGCAACACCGAATGACGGTCCATAGCAACGAAAGGCACTTTGCCTGCACAATTTGTAACAAGAGATTCAAACGGCCCAAAGACATCAACGACCACATCAGGAGGTCAGCCAAAGATAGGAATCCAAAACCTGTCTACTGGAAGCGAGTTCTTCCAAATGAGGATAGCGCTCCAGACAACACTGCAGCTGATGAAGAAGCTAATCATACCGTAGAGAAGAAGAGTCTGATTTGCAGCAATGAGGCAAAACATGTCCAAGAGAAATATAGTGTGCCTTGTACACAGGAAGAGAGTGCCTTAAAGGAGGCAGATGCACTACCATGTACTGAATTACCCTGTGAGAGTGACAAGACATTTGACCACCCTCAGACAGAGACGGAAACGGGGGACAGAGAGCAGGCAGTGGGTCTGGATGACATTGCGGGGAATGAACACCATGTGGGGAGTGCACAGCAAGATCCGCCTGAACAAATGGAGAATGAAAATTATGAGGAGTTTGAAGATGATAATGTGGAAGACGAGGATGACCCTTCTTATTCTGGGTCAGATTACAAGGAGGACCACAAGGGGGATGAGGATATCAGTGAAGAGGAAAAGAAGAAGCCCAgaaggggaaggaaaaaaaatccagaagcTCAGGCCTCGAAATCCAAAAAAGAGCACTACATCATCAAATGTGACAAGTGTGAAAGCCAGTTTGTCTTCAGGAGGAAGTTTGTGGCTCACTACCAGGAGGTGCATCAGTCACAGCCAGAGAAGTTCTACAAGTGCGACACGTGCGGGCGGTCCTTCGCCAACTACAGCTGCTGGAAGGAGCACCAGGCTTGCGTTCACACTGAGGAGCGCCAGTTCGCCTGCACCCTGTGTGGCACTACTTTCAAGCGCAAGAGAGATGTCCACGCTCACTACATGCGCAAACACGAGGGCCGGGTCAAGAGGCCGCTGTGCTCGGTGTGTGGGAAGATCCTGAGCTCTCGGACCGCTCTGGTCTTCCACATGAGGACACACACTGGAGAGAAGCCGTACCAGTGCTCTGTGTGCAACAGCAGGTTTGCCCAGCCGTCACAGCTCAAGATCCACATGAGGTGTCACACGGGAGAAAAGCCCTATATCTGTGAGGCAAGCTCAATGGCCACCGAAGGACACACACCGGTCCACGACAGAAAAGCACAGTGGAGGACCTATGTGATTGACCTCACCACAAAGAAGGAACACAACTGGTCCAAGATAGAGACTTTTGGAGATGCCTGTGTGGAGGAGAGCCCTGTCAATCCAGATTTCACTGGCATCCACACGCAAGCACACGAGtTACCCAAAGTGCAGAAACATGAGTGACTCTGTTCAGCTAGTATCAAAGTCTTACCATCAGAATTTACTGAATGAGATGCACCAGATGCAGGTCTCAGGCCAGCTCTGCGATGTGACTGTGCAGGTGGACTACCAAGGTCACCTGGAGGAGTTTGAAGCCCACAAAGCAGTGCTGGCGGCCACGAGCAAGTTCTTCAAAGACATTTTTCTTGAAGAAAATCCTGTGACTAAGTCAGATTCCAAAATAGTCTTGCAGGAAATGCAGACAGCAGATTTTGCCTGCTTTCTGGAATTTGTATACACTGCCAGAGTGGAGGTTGAAAAGGGCAGGGTTAGTAACATGCTCCAGGTAGCCAAGAAATTGCAATGTCGGAACCTAGAAGACACCTGCATCCAGGTGGTGGAGTTGAATTTGCCTGATTTGCCAAGTCCAAGTGGAACACAGAGGGACAATTTGTCACAGGAAGCCGAAGGGGAAGCTGAGACACAGATGACCTTGAACAACAGCAGCTCACAAGAAGAACCAAATACAGAAACAGCTGGGATGGAACAAAACAATCcaatgcagaaaacagaaaagaaggaATCCAGGAAAGATGagcaagtgaaaaacagaaggtTAAGCACCAGACTGGCGGGCCGCAAAGTATTTGTGGACATtccaaaaaagaaatatatgaGAAAGCTGAAGGACCAGGAGAAGGTGTCACTTGAGATGTCCAGCCAGTGTCCATCCGAGGAAATGCCAAAAAAAGCAGGAATGAAAGAGCCCGCAAACAAGGAGGAATATGTCCAGGAAAAGGCAGTCGAAGAGGAGGTGGAAGCTCAGGAGAGATCCGATATTGCTGATCATGAAGCCCAAGATGTGATTGAAGATGACTGTACCGATATGGACTTTGAGCCAGATGAAGACCAGCAGGCCAAGGATCTGGAAGATGGTGAGGAGAAGAAGAATAAGAGGGGAGGACTGTTCTCTTGTGAGACATGTCAGCGGGGATTCCAGTACGAGAAGAGCTTCCTGAAGCACATCAAGCAGAGTCACGGTGTCATGCCAGAAGTGATCTATCGCTGCAACACTTGCAACCAGACCTTCGCCAACCGCTGCAACCTGAAGATCCACGAGAGGCACGTCCACAGCGATGAGCGGCTCTTCCCCTGCGACGTCTGCAACAAGGCCTTCAAGAGAAAAAAGGATGTGAAGAGGCACAGCCGCCAGGTGCACGAGGGGGGTGGAGAGAGGCACTTTTGTCAGCAGTGTGGGAAGGCCCTGAGCTCCAAGACTGCGCTTATTCTTCACGAGAGAACTCACACTGGGGATCGTCCTTATGAGTGTCCGGAGTGCAAGGCCAAGTTCTCCCAGACCTCCGCACTCAAGACACACCGCAGAACTCATACTGGTGAAAAGCCTTTCTCCTGTGATGAATGTGGTGCTAGATTCACACAAAACCACATGCTTGCTTACCACAAGCGATGCCATTCAGgAGAAAAGCCTTTCATGTGTGAGAGCTGTGGGAAGAGCTTTGCTTCCAAGGAATACTTAAAGCACCATTCTAGAATCCACACGGGAAGCAAGCCGTTTAAGTGTGAGATCTGCTCTCGCGCGTTCGCACAGAGGAACTCACTCCACCAGCACATGAAAGTGCACACTGGTGAGCGGCCATATCACTGCAACCAGTGCGGAAAGCAGTTCACTCAACTTAATGCTCTACAGAGACATCACCGTATCCACACGGGAGAGAAGCCATACATGTGCATGCTGTGTAACCGGACATTTACAGACAAGTCCACTGTCAGGAGGCATACTATGACCCATGACAAGGACACTCCCTGGAAGAACTACTTGGTGGTCCTGCAAGGCAATGTGGAAAGCGGCCACAagaagagaatgaaacaagggGACGTGGATTTCGTGAAGCAACAGGACAAGGAGGCAGCAGCGGCAGCAGAAACCAGCGATGGGCAAAGCATGGTCACCCAGGGTGAGCCAAGCATGGTGGCTGTGTCTGAGCAGCCTGTGCCCGTGTCCATCGCGGGGGACTGGAGCTCTCCTGGGCAGACAGCCATAGCCCTGGTCAGCCATGCCACGCTAGCAGGCTACACCGTCATCCAGACTGACGCACCGGAGACTCACCTGCACGCTGTGGTCAATGTGGAGCACCTGGCTGGCACAGGTACTGAAGTAATCTCCCTGGACAGTCCCATCTCTGTGGCTTGCCCGGTGACTGTTCCCGTTTCGTTGTGCACCCCAGTCCCCACGGAGACCACCGTCGAGACACAGCTGTCTGAGCCTGAACTGGTGCCCAGCTGCCCCTCAGTCCCTGTCCCTTCAGAGGCCCCTGAGTTAAACGTGACCGAGAGCGTCAGTGTTGAAGCTATGGAGATGACCTCTGAACCTGCCTGCGCCAACACCACTGACCCCCAACACACATAACGTTTTCTTTctccaatttgttttaattaaaagttgaTCAAACTAATGTACAACTCCTACATGACGATCTGAATTACGTTTTGTTTCAtagttttcattaatattttttaatcctcTACACGGTGTAGTTCCTGTATATTTCATATAAGgactcattttcttttcactgctTTTTGTTGACAATGTAATTGTTAGAGAACCTCTTTGTCGTAC

Function

GO: NA

KEGG:

id description
K22402 GZF1; GDNF-inducible zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004218 True 4933 mRNA 0.50 12 38731508 38743566

Neighbor

gene id symbol gene type direction distance location
AMCG00004214 NA coding upstream 504697 38225556 ~ 38226811 (+)
AMCG00004216 NA coding upstream 511413 38213382 ~ 38220095 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding upstream 545371 38088863 ~ 38186137 (+)
AMCG00004208 NA coding upstream 1124286 37570803 ~ 37607222 (+)
AMCG00004209 SF3B6,sf3b6,pm14 coding upstream 1161242 37567333 ~ 37570266 (+)
AMCG00004222 NA coding downstream 82255 38825821 ~ 38833968 (+)
AMCG00004223 mcm8,LOC107738559 coding downstream 96450 38840016 ~ 38850011 (+)
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding downstream 107223 38850789 ~ 38855317 (+)
AMCG00004225 NA coding downstream 210571 38954137 ~ 38963635 (+)
AMCG00004228 NA coding downstream 505896 39249462 ~ 39293233 (+)
G6598 NA non-coding upstream 115044 38616244 ~ 38616464 (+)
G6586 NA non-coding upstream 264865 38466396 ~ 38466643 (+)
G6585 NA non-coding upstream 312732 38416598 ~ 38418776 (+)
G6573 NA non-coding upstream 476025 38255229 ~ 38255483 (+)
G6471 NA non-coding upstream 1215010 37514882 ~ 37516498 (+)
G6617 NA non-coding downstream 6348 38749914 ~ 38756252 (+)
G6627 NA non-coding downstream 32387 38775953 ~ 38777500 (+)
G6653 NA non-coding downstream 114552 38858118 ~ 38859005 (+)
G6667 NA non-coding downstream 183172 38926738 ~ 38927030 (+)
G6676 NA non-coding downstream 223112 38966678 ~ 38966890 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 883788 37832623 ~ 37847720 (+)
G6369 NA other upstream 1731350 36999357 ~ 37000158 (+)
G6328 NA other upstream 1839762 36861547 ~ 36891746 (+)
G6314 NA other upstream 1956985 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2033623 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1582844 40326410 ~ 40341235 (+)
G7094 NA other downstream 2716010 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3466864 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3945213 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5874619 44618185 ~ 44640732 (+)

Expression


Co-expression Network