AMCG00004220 (gpcpd1)


Basic Information

Item Value
gene id AMCG00004220
gene name gpcpd1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38757764 ~ 38784839 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004220
ATGCGGTGTCACCGTGTAAAACGTCCCCCTGGCACGGATAACACAGTTCCTACCTACAATCATGCGCATTGCAGTCTACTGAACATACGGCGCATTGCTACATACAGCTCCATAGGTGAAATAATAGCTGTGACTGGTAGCTGTGAGGCCCTTGGCAGCTGGTCTCCACAGAAAGCAGTGGTTCTAGAATCTGGTGGAGAAGATGGACTGAAGCTGACACTGGAAGGCTATGAGGAAGAAGGGGAAGATGACGAAGAGCACCCTACCACCTGGAGTAAAATGACAACCACGCTTGAGATCAGTTTGATCAGTAGCAATGGGTATAAATCACGCCATTCTCAGCCAGAATGTGGCTATGCACTGGAGCCAAACCAATGGACAGAGTACATCATTCACACAATGGACCCAGACAACCTGGAACTAACTTTTGAGTTTTTTGAGGAGGATTTGAGTGACAAAGTGGTCCAAGGGGACATGCACTCTGGGTTCGTGGGCACTGCCTGCCTGCTGTCTTCCACATTTGCGGAAAGTGGCAAAGACACGGGAATCGTCACTCTGCCTATTATCGGTAGAAACTCCAGACAGTCCCTTGGAAAAGTCAGAGGGGGCTGCCTACGTTGAGTTTGATGTCCACCTCTCAAAGGATCATGTTCCAGTTGTATATCATGACCTTACGTGTTGCATTTCCATGAAGAAGAAAAATGATAAACACTCACTGGAATTGTTCGAAGTTCCTGTGAAGGATCTTACATTTGACCAACTTCAGCTGCTAAAGttggcTCATGTGGCTGCAATGAAGGTGAATGACCATAAAGAATCTCTGGATGAGGAGGAGTATATTGCTGAGCACCAGCCTTTCCCTTCACTTGCACAAatctTTCAAGCTGTGCCAGAGAATGTGGGTTtcaacattgaattaaaatggcTCTGTCAACTAATAgaTGGATCCTGGGAAGGAAATCTCTCAACGTATTTTGACATGAACCTTTTCCTTGACATTATCCTGAAGTGTGTGCTCCAGAATGCTGGGAAAAGAAGAGTAGTTTTTTCATCGTTTGATCCTGACATTTGTACAATgGTTCGCCAGAAGCAGAATAAATACCCAGTCCTGTTTCTGACTCAAGGCAAATCTGAAATCTACCCAGATCTAATGGATATTCGGTGTCGGACTACTTCAATGGCAATCAGCTTTGCACAGAGTGAAGATATGTTGGgcataaatgcaaatgtagaGGATTTGCTGAAAAACATGGACTACATTAAAGAAGCGCAATCAAAAGGATTAGTAGTTTTCTGCTGGGGAGATGATACCAATGATCATGAAAACAGGAGAAAGCTCAGAGAGCATGGGATTGATGGACTGATTTATGACAAaatttgtGAGGGTTTGGTACCAAGTTTCATTGACACGAACTCTGCAGATAACAGTAATGTCTCCCTGGTTCCTGAATGTTTTGCTGAATGTTTTGGCTCCTATTTCATGCCTAAATGATCATATTAGCTTTGTGCACATGAAATGGATTAGCTTTCCTGAATAATTGTGTGTTGTTTGACTAATCATGTACTATTCATTTAATTGTCTAAAGGTTATcgtattttaaagtaatttttaagATATCcctatttaaatatgtttgtaatgGCTTTAAAGTTCAATGAAACttcattaaaactatttattagTCAACTGCCCCCATCATTTCTGTGAATATTTGCTTCAGTGGAATACTGTAGTTGTAatcctttgttttattattaatattattattattattattattattattatttaattacttaaattttAAAACTAATACTGTCTTTAAGTGGCTTGCCATAAGTAATGTAAATGTCTGaatattatgtgtgtgtttgtaatttgtcaTAAAAGGTAGTTTTAAGTAAATAggctacatatttttttctcttggaaAAATAGACAGTTGCTTGGCTAGTATGTCTGCATGTATAGAGCTAAAACAAGCATGGCCTCATGGCTTTAGATGTACTCCTGCTGTAGCACACATGTGCAATAGTGGGTATAACGCGAAGAGCAGAGGGTTAGGGTTTTCTCTAAAATACAGCTGTAGTACCATATTTCTTGGCATGTTCCATCATAATTGGTATTGGGTTATCTGTGATCTGACTGTACAGTAGTAATTGTTAtaggtattaataataatatttcttggcaCAGGTTACACAagctttccaaaaatgtatggGGCAAAAGGCAaaggtgtttgttgtttttagaaGTTACAATTTAAAGGATGTTTTTACAGAACCACAATGTTACTTGTGctttatattgtattgctttttgaaATCCAAAACCAATTTAATTCAAGCTAGAACCAACCATTTAGAGATCTATTGGAGTTCCCAGTAATACTCTGGCAACATGAAACTCATACAGGAGATGTCATACAGTACTTCTCCCTAATGAAATCCGAGGAATGTGTAATGTGCTGAATTGGTGGAATAAAAATATTATGCAGCCTAGATATGTTCTATTGTGGTTGAGGGTTTACTTTTAACTTTCTGCGTTAATCATTATAAGATGCAACTTAAAAAACTTAGGTGACTTTTGAAATGGATCTATATTCTCTGTGCTACAGTAACCTGCCTAGTAGATAcgtaaagctttttttttgcagataaattaaaaactgaaagacaCTCGGGGTTGAAGTCATTGAAGTTTTAGAGGTATTCTTCACTGTTACTGTGTTGACTGACTATCATTCCTTTTTTGTATGTACCCAGGATCTGTGAAGATCAGACCGAGAAGcaaaatatcttcaaattaGAGGAGCAGGTGTCTAGGAAGGAGGTGATTTCTGATGAAACTATGAAAAGCTGTGTGTGTTCCAGCTACTGTATTCCTTGTACATCTGAAGCCTGTGCCAATACAGGAGAGGCTGGCAGTATAGAGTCAGATTCTGGCCTCAGTTCCTCTTAAATTTGAAATCCATGCAAAGGCAATCAATCTTGTCTACTAGTTCTCCAGGACTGAATATATTTACcaagtgtttacagtgtatattacatattagataaaaataaagcatgaaaTTAATATAGAATCTGCTGCTTCAAATTCTAAGTAAGGGAACAGGCCATACAGAAATAGATCCTAGCATGTTGAACACTAGTGCCACAGAATAGTAACTTGTCTGTAGTTTTTTATCACATTTCTCACACTCCAacttcaatatattatttatgcatttgtgtaaATCTGTGTTCCTTCTGCCAATTGTACCTTTTATTAAACATGGTGACATGAATAACAAGAAGAGCGGTTTCCTAAAGGGTTCACCTTTAAGGATCAGACCTAGCTTCAGGTTTTGTGCTTCTATACATAGTTTTTATGAAGAACCTTTTTGGCCAGAGGGATGTTTAGTTTCTGGTAATGGATTTGCtcatatttattcatgcatttatttacttgaGCACACAAATTCACTTCCAtgatattattaaattatctttaaCAAGCAGTTGATCTACGGTGTAAATCTGAAATTACCCTGTTTCAGAGCACTGGCTGTTGTTGataacaatacatttgtatttttatatagttaCCTGAAGTGATGCCTAAATGCTGGGGATATACATTGTAGTCTTAAATAGTATATTTAGTGGTTTTAATCACAATGTTTACATACACAATTGATTTGATTGTACAAATGTATGTTATATTATGGTGAATGTAATCATTCACATTCTTCATCAAAGTTCAGTGAGCTTTACATGTGAGCTGTATATTTCTGTGCATCTCTGCTTATAACTTAAACAGTATGTAGCTTTGGCTGGGaccaaacaaaatatacaaacaaaaaccaggAGGTATTTTCTTCAGTTGtcttacacaatacattttgccAGCAACAATACaatgcatagttttttttaattctatctATGTAgttgtttgaaatgtatatattttttatttacataatgcTGTTATTGCCTACTAATTTCCCATGGGTCATAGAACACTGTAAAACAAGAGCAATGTGGTGTTATAACATCAAGATATTGCTTATTGTATAAATGTAGAATAACACTCTGTAAATAGCAATTGGTTTACTCTGACCTCCTATGCCTGATGAAAATCTAAATTCaggtttatgtatgtatgcagaaTCCTGTAACTAAcaactttaaacaaaatgaacttggaaaataaaactgaagaactACA

Function

symbol description
gpcpd1 Predicted to enable glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in cytoplasm. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: glycerophosphocholine phosphodiesterase GPCPD1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:2001070 starch binding molecular_function
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG:

id description
K18695 GPCPD1; glycerophosphocholine phosphodiesterase GPCPD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004220 True 4219 mRNA 0.37 14 38757764 38784839

Neighbor

gene id symbol gene type direction distance location
AMCG00004219 si:rp71-81o21.2,LOC108411873,LOC108258064,LOC103023605,LOC107667620,LOC107756672,LOC107742707,LOC107593246 coding downstream 3137 38745686 ~ 38754627 (-)
AMCG00004217 trib2 coding downstream 168871 38581754 ~ 38588893 (-)
AMCG00004213 NA coding downstream 277824 38334273 ~ 38479940 (-)
AMCG00004212 ddx1,LOC107726609,LOC107726454 coding downstream 669260 38077481 ~ 38088504 (-)
AMCG00004211 NA coding downstream 779653 37962277 ~ 37978111 (-)
AMCG00004221 NA coding upstream 49069 38833908 ~ 38840031 (-)
AMCG00004226 LOC106571740,LOC107742721 coding upstream 76926 38861765 ~ 38876675 (-)
AMCG00004227 LOC107552893 coding upstream 318751 39103590 ~ 39118673 (-)
AMCG00004232 NA coding upstream 340861 39125700 ~ 39145260 (-)
AMCG00004234 pak5 coding upstream 672305 39457144 ~ 39479080 (-)
G6599 NA non-coding downstream 141299 38616219 ~ 38616465 (-)
G6588 NA non-coding downstream 291100 38466413 ~ 38466664 (-)
G6574 NA non-coding downstream 502393 38255009 ~ 38255371 (-)
G6491 sf3b6,SF3B6,pm14 non-coding downstream 1187971 37567331 ~ 37569793 (-)
G6462 NA non-coding downstream 1259318 37498198 ~ 37498446 (-)
G6668 NA non-coding upstream 141882 38926721 ~ 38927022 (-)
G6762 NA non-coding upstream 810102 39594941 ~ 39596639 (-)
G6770 NA non-coding upstream 983570 39768409 ~ 39768610 (-)
G6793 NA non-coding upstream 1054329 39839168 ~ 39841082 (-)
G6818 NA non-coding upstream 1225572 40010411 ~ 40014259 (-)
AMCG00004203 NA other downstream 1375811 37324010 ~ 37381953 (-)
G6441 NA other downstream 1388942 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 1970642 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 1978702 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 2216923 36495772 ~ 36540841 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 1057096 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 3280150 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 3591887 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 4618114 43402953 ~ 43450255 (-)
G7608 NA other upstream 5736075 44520914 ~ 44522213 (-)

Expression


Co-expression Network