AMCG00004222


Basic Information

Item Value
gene id AMCG00004222
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38825821 ~ 38833968 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004222
gcccccccccacacacacacctcctggTTTATATCCAACACAGGGACCCAGCCTGCCGTAGTGAGCCGGAGACCCCCGCTCCACAGCGCACAGCCGGAGAAGACAGCGGACCGGATTCCTTAGGCTGCCTGAGCAGCTACACTACTGGGGAAGGCGACCAGATCTTAGGAAGCGTTGCAGCACCTTGTCACTATGAAGCTGACGCTCCTGGTCGCGGTTGTGGTGTCTTTTCCACGAGTTACCTCATCTGTACCTGttgggaaagaaaggaaagaggaTTTGGTGACTCGCTGTATAGTGGAAGTCATTTCCAACGCACTTTCTAAACCAAACGCTCCGCCTGTGGATCCAGAATGCAAAGAAATTCTTAAATCGGGTTCAAGACATGAAACAGCAGAGAAGAAGAACAATGAAGAGGTTGTGCATTTTGAAGAGAGCCAAAGTCAGGAGCCTGAAGAACACTTACAGAGAAACCAAGAGGAGCCCAGTATCAAGGAAGAAGGGCCTGGGGAGAAGAGGAGCCACCATGAGGAAGAGAACTACAGCAAAGCAGGTGAACAGAAGCAGATCAGCACAGAAGACAAAAGAAGTGAGGAAGTAGTCAAAAGATCTGAGGAGAAAAGGCACCACAATTTGGAAGACAAAAGGCACCTCTCAGAGAGTGAAGAAGATGACGAGGAAGAAAAGGAATTCTCCAAACGCAGCCACCACAGAGAacctgaaaacaaaagacaccAAAGTGAAGAGGCTTCTCAAGAAGAGAGTGAGGAGCCCTGGAAGAGATCTCACCACTCACTCAGCCAAAGGAGTGAGGAGGAGTATGAGGATGAAAGGGCCCAGGAGGCCCATGAAGGGAAGAGATCTGAGGAGTCTAAAGAATGTGAGGAAAAAGAGAAGCGCCGCTATGGGGGCAGTCACAAGCATTACCACAGGAAACACAAACGCAGCGGCACTTCGTCCGAAGAACTGAGAAGCGAAGAGTCTGAAGAATCGGAGGAGAAAAAGCATtttgaagaggaggaggaagaggaggaataCAAGCAGCACCAGGAAGAGAAGAGACACTTTGGAGAGGGGAGTGATGAAGAGAGGGAAGACAAAAGACATGGATATGCAGAAAAGAGACACCATGTCCCAGAGAAAAAACACCACTGGGAGGAGAGTGAAGAGAGACGGCACCACAGtagggagaaaaaaaggcaTCTTTCAGAAGACAGTGAGGAACAGGAGGAGAAACGCCACCATGGGCAAAAGAGACACTACTCCCAGGAGGACAAAAGACACCATGATGAAGAAGAGAGAAGCATGTGGGATGATAGTGAAGAAGAGACAGACACGCATCATGCTGAAGAAAAGAGACACCATTATAGAGAAAGCAAGGATAAAAGACACCATGCCTTTGACAAAAGACATAGATTTGACAGcagtgaagaggaggaggagaaggaagacAAACATCACCATGAAGACAAGAGACACCATTCagatgaagaaaaggaagaagaagaagaagaagaagaaaagagacaCCACAATCCTGAGAAAAAACACCATTGGGAGGAAccagagagaaagaagagacaCTCTGAAGAAAAGAAGCACAGTTTGGAGGAAAGTGAGGAGAATGAAAAGAGACATCATGAAGACAAGAGGAGACACTTTCAGGACAGCAGAGAAGATGAAAGGCACCACAGCTCAGAGAAAAGACACGTCTCTGAAGAAAGTGAGGAAGAGGAAAGACATCACGGAGAGGCCAAGAGGCAAGGTTCAGAGGAAAGTGAGGAAGAAGACCAGCATTATGAGGAAAAGAGACACGTATTTGCAGACTCTGAAGAGAAACGGCATCACGCCGATGAGAAGAGACAGCAGTCAGAAGAAtctgaagaagaagagaaacGCCATCCCCTCTCAGGGGAAAgcgaagaggaggaagaagaaccACAACACGGAGAAGACAAGAGACACTATAATGAGGACAGCCAAGAAGAACTGAAACGGCATCACCTAGAAGACGACAAGGAGCTAGAATTAACAGAGAGGCACCATCCGTCTGAGAAGAGACATCATACTGAGGAGCAGAAGAGGCATCACAATGAGGAGAAAAGACAGGAAAGTGAAGAGGAGggggaagaagaaaaggaacagGCCCTTCAGTACCTTGAGGAGCAGAAACGGAGTGAAGCAGAGAGACACCTTCCAAGTGAGGAAGAAGGCGGTTATGACAAAAGGTACCCTGGGGAGTACCGGGCATACTATCACCCTGCATGGTGGAAGAGACATTATGAGAAAAGAAATGGCCTGAAAGAGAACAGGTTTGAAAATGAGGAGGAAAAGAGGCATGTGGAAGAGAGACGGCAGTACCCAGGGGCTGAGGAAGAAGACTGGTGGGACAAGAGGCAAGCAGAGGTCGATTATGGAAATCATGCGTATGAGGAGaaaaggaattattttattcctcaTCATTTCCAGGAGAAAAGGCCCTACCCAACAGGCAGGATGGATGAACTAGCCAAATTGCTGAACTACAAAAAGGCAGTGGAGTTCCCTGATCTTTCTGaggcagaggaagagaaaaGGAACCTTCATCAGAGGCCGCTTACACCAGAAGAGGAGAAAGAACTGGAGAATCTGGCAGCGATGGACAGGGAGCTGCAGAACATTGCCGAGAAGCTCCACGAAAACCGTAGAGGCTGAACGACGTCCGACACCCATACACGAACTAGAGCCGATCATACCTGACCTACAAACCTGCCGTGTTGTTGTGATTTTCACTTAACTTGAAAAAATGACATTATTATCCACTACAAGCAGTGTTTTTAAGACATCGGTGGAACTATTTGTATTGTgcaattttcttatttaaagatACCTGGCATGGGAATTGTTTAGAACAATAtagatacattttacagaactatgtaatgaatatatattattctcaaatgatttgtttctgtttttgaacgttctttgttttttgagttttgCATACAATAAAATCCAACATTCTGGGACC

Function

GO: NA

KEGG:

id description
K19991 CHGB; chromogranin-B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004222 True 3016 mRNA 0.47 5 38825821 38833968

Neighbor

gene id symbol gene type direction distance location
AMCG00004218 NA coding upstream 82255 38731508 ~ 38743566 (+)
AMCG00004214 NA coding upstream 599010 38225556 ~ 38226811 (+)
AMCG00004216 NA coding upstream 605726 38213382 ~ 38220095 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding upstream 639684 38088863 ~ 38186137 (+)
AMCG00004208 NA coding upstream 1218599 37570803 ~ 37607222 (+)
AMCG00004223 mcm8,LOC107738559 coding downstream 6048 38840016 ~ 38850011 (+)
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding downstream 16821 38850789 ~ 38855317 (+)
AMCG00004225 NA coding downstream 120169 38954137 ~ 38963635 (+)
AMCG00004228 NA coding downstream 415494 39249462 ~ 39293233 (+)
AMCG00004229 NA coding downstream 468741 39302709 ~ 39312703 (+)
G6627 NA non-coding upstream 48321 38775953 ~ 38777500 (+)
G6617 NA non-coding upstream 69569 38749914 ~ 38756252 (+)
G6598 NA non-coding upstream 209357 38616244 ~ 38616464 (+)
G6586 NA non-coding upstream 359178 38466396 ~ 38466643 (+)
G6585 NA non-coding upstream 407045 38416598 ~ 38418776 (+)
G6653 NA non-coding downstream 24150 38858118 ~ 38859005 (+)
G6667 NA non-coding downstream 92770 38926738 ~ 38927030 (+)
G6676 NA non-coding downstream 132710 38966678 ~ 38966890 (+)
G6684 NA non-coding downstream 288579 39122547 ~ 39148294 (+)
G6769 NA non-coding downstream 934416 39768384 ~ 39768607 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 978101 37832623 ~ 37847720 (+)
G6369 NA other upstream 1825663 36999357 ~ 37000158 (+)
G6328 NA other upstream 1934075 36861547 ~ 36891746 (+)
G6314 NA other upstream 2051298 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2127936 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1492442 40326410 ~ 40341235 (+)
G7094 NA other downstream 2625608 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3376462 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3854811 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5784217 44618185 ~ 44640732 (+)

Expression


Co-expression Network