AMCG00004223 (mcm8,LOC107738559)


Basic Information

Item Value
gene id AMCG00004223
gene name mcm8,LOC107738559
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38840016 ~ 38850011 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004223
CGGAGCAGCAGAGCGCAGACTTCTGATCATAAGCGGAACCGGTAGTGACGCAGTTCACGCGGCAAACCCGAAAATGTCAACATAAGCTCGTGAGAGTCACTGCAGgatCTGAATGGGAGGCTCAATAAAATGAGTGGAGACTGGCGAGGCAGGGGGTCCTGGAAGGGAGGGGGACAGAGAGTCTGGAGACGTGGTGGAGGGGACAGTAGGGGTGGCTCTGGAGGCTGGAGAGGTGGGAGAGGAAATGGGGGCTGGAGGCCAGGGGGCAGTTCCTGGAGGGGCTCTACCCCAAGAGGCAGAGCTGAAGGAGaTGGAGGATTTGGAACACCAGCTATTCGGCCTCGGATGACACAGACAAGGCTGGACCAGGTTAGCCAATACAAAGGCTGGAAACTTTACTTCTCTGAAGGTTACAGTGAGAGTTCTCCATATGTTCAAAAGATTCGGGCATTTGAAAATTACTTCATGAACAGAATTGATCTTTATGACAAGGATGAAATTGAAAGGAAAGGCAGCATAATGGTGGATTATAAAGATCTTTTACAGGATAAAAATCTCTCGGACGCAATACCTGATTTTGCAGCAGAGTTCAGAGACATGCCAGAAAAGATACTGGACTGTTTGGGAATGGCCATACACCAGGTTTTAACAAAAGATCTGGAGACGCATGCAGCAGAACTGCAGCAACAGGCAGGTCTTCCCAGTGGTGCCCCACCTATTGTCAACATGCCGTACATCCATGCCAGagTTTACAACTATGAACCACTGACCCCATTGAAAAACCTCAGGGCAAACTTTTACGGGAAGTACGTAGCCCTTCGAGGAACTGTGGTTAGAGTCAGTAATATCAAACCGCTTTGCACAAAGATGGCTTTCACCTGCAACACGTGTGGAGATACACAGAGCTTTCCCCTCCCTGATGGCAAATTCATGACACCTAACAAGtgTCTGCAGCCAGAATGCCGTAGTCGATCATTCACACCAAACAGAAGTTCACCTTTAACACTAACTGTGGACTGGCAGACTATTaaGGTTCAGGAGCTGATTTTGGATGACCAGAGGGAAGCTGGTCGAATTCCCCGGACCATTGAGTGTGAACTTTCGCAGGACTTGGTGGACAGTAGTGTCCCGGGAGACATGGTGACCATCACAGGGGTTGCTAAGGTGTGCAGTGAAGAGGGAAGTGGAAGgaacaaaaaagataaatgcatGTTTCTGCTGTACATTGAAGCGAACTCCATCAGCAACTCCAAAGGCCAGAAAGCAAAAGACATTGCAGGGTCTCGGAGCCAGGGGGCATCGCTAGAATTTTCTCTCAAAGACCTCTATGCCATTCAAGAGATTCAAGCCGAAGAACACCTGCTGAAATTAATTGTCAActCACTTTGCCCAGCTATCTATGGGCATGTGCTGGTGAAAGCAGGGTTAGTCCTGGCTTTGTTTGGGGGCTGTCAGAAGTTTGTGGATGACAAGAACCGCATACCGATAAGAGGAGACCCTCACATTCTTGTGGTGGGAGACCCAGGTCTGGGTAAAAGTCAGATGTTACAGGCTGTGTGTAACATTGCTCCACGGGGGGTCTATGTGTGTGGAAATACAACCACCACGTCTGGTCTGACTGTCACTCTCTCCCGGGACGGTGGGTCAGGAGATTATGCATTAGAAGCGGGAGCGCTGGTACTTGGAGATCAAGGCATCTGCTGTATTGATGAGTTTGATAAGATGGGGAACCAGCACCAAGCCCTGCTGGAAGCCATGGAGCAGCAGAGTATCAGCCTCGCCAAGGCTGGGATTGTCTGCACCTTACCAGCAAGAACCTCCATCATTGCAGCTGCAAACCCTGTGGGAGGACACTACAATAAAGCCAAGACTGTCTCGGAGAACTTGAAGATGGGGAGTGCTTTGCTAtccagatttgatttggtcttcaTTCTGTTAGACACCCCAAACGAAGATCACGATCACATGCTGTCTGAGCACGTCATGGCCATGCGCTCAGGGAAAAAAGGCTTCTTCACCAGTGCCACTGTCACCAGGAACAGCACGCAGGATCCCAACACTTCCATCTTGGAATTGCACTCTGATAAACCTCTGTCTGAGAGGTTGAAGGTTCTACCTGGAGAAAGCTTTGATCCCATTCCTCCGCAGCTGTTGAGGAAGTACGTGGGTTATGCTCGCCACTATGTCCAACCCACAGTGTCTGTAGAAGCAGCTCAGGTGCTGCAGGAATTTTACCTGGAGCTGCGAAAGCAAAACCACGGAGCAGACAGTACCCCTATCACCACTCGCCAACTGGAGTCTCTCATTCGCCTCACTGAGgcAAGAGCAAGACTGGATCTTCGAGAACAAGCTACAAAAACAGATGCAGAAGATGTTGTAGAGATAATGAAACACAGCTTACTAGATACCTTTTCGGATGAGTTTGGGCGACTAGATTTTGATCGCTCTCAGCTGGGCTCTGGAATGAGCAACAGATCGCAAGCAAAGAAGTTTGTGGCAGCTCTCAACCAAATAGCTGAGCGGACCTACAAGACTATGTTTGAATCCCAGCAGCTCCGACAAATTGCTAAGGAGCTGCAGATACAGgtAGCAGATTTTGAAGGCTTCATCAGCTCCTTGAATGAACAAGGCTACCTTCTGAAAAAGGGACCAAAGGTTTACCAACTTCAGACCATTTGATTTGGCTATGGAGTCCAGTTATTAATACCAATTctacaatgtaacaaaaattaCTAATCTTGATTTTTACACCTTTGTTCTatagacatttaattaatgaactGTGTAATTTTTAATTGGTATGACACATTTTTCTGTCCTGTTCTTGTAAGTTCTGATGTTCTCTGTAATGTATTGATAACTTCAATCACTATGTCAATAATACCTTcattttctgtaacatttttgtagaaaaagaaaagttcagGACATGCCATTTTAACCTCACgtgctgtatttgttatttctttactgtatagtgtttattatttgtgttcctatttaaaatatgaatttcaa

Function

symbol description
mcm8 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to single-stranded DNA helicase activity. Predicted to be involved in double-strand break repair via homologous recombination. Predicted to act upstream of or within DNA duplex unwinding and DNA replication. Predicted to be located in chromosome. Predicted to be part of MCM complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 10. Orthologous to human MCM8 (minichromosome maintenance 8 homologous recombination repair factor).

NR:

description
PREDICTED: DNA helicase MCM8

GO: NA

KEGG:

id description
K10737 MCM8; DNA helicase MCM8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004223 True 3018 mRNA 0.47 19 38840016 38850011

Neighbor

gene id symbol gene type direction distance location
AMCG00004222 NA coding upstream 6048 38825821 ~ 38833968 (+)
AMCG00004218 NA coding upstream 96450 38731508 ~ 38743566 (+)
AMCG00004214 NA coding upstream 613205 38225556 ~ 38226811 (+)
AMCG00004216 NA coding upstream 619921 38213382 ~ 38220095 (+)
AMCG00004215 LOC106593169,LOC107726627,LOC107690899 coding upstream 653879 38088863 ~ 38186137 (+)
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding downstream 778 38850789 ~ 38855317 (+)
AMCG00004225 NA coding downstream 104126 38954137 ~ 38963635 (+)
AMCG00004228 NA coding downstream 399451 39249462 ~ 39293233 (+)
AMCG00004229 NA coding downstream 452698 39302709 ~ 39312703 (+)
AMCG00004230 NA coding downstream 547492 39397503 ~ 39436248 (+)
G6627 NA non-coding upstream 62516 38775953 ~ 38777500 (+)
G6617 NA non-coding upstream 83764 38749914 ~ 38756252 (+)
G6598 NA non-coding upstream 223552 38616244 ~ 38616464 (+)
G6586 NA non-coding upstream 373373 38466396 ~ 38466643 (+)
G6585 NA non-coding upstream 421240 38416598 ~ 38418776 (+)
G6653 NA non-coding downstream 8107 38858118 ~ 38859005 (+)
G6667 NA non-coding downstream 76727 38926738 ~ 38927030 (+)
G6676 NA non-coding downstream 116667 38966678 ~ 38966890 (+)
G6684 NA non-coding downstream 272536 39122547 ~ 39148294 (+)
G6769 NA non-coding downstream 918373 39768384 ~ 39768607 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 992296 37832623 ~ 37847720 (+)
G6369 NA other upstream 1839858 36999357 ~ 37000158 (+)
G6328 NA other upstream 1948270 36861547 ~ 36891746 (+)
G6314 NA other upstream 2065493 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2142131 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1476399 40326410 ~ 40341235 (+)
G7094 NA other downstream 2609565 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3360419 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3838768 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5768174 44618185 ~ 44640732 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_00637385_00645599 MCM8 coding CI01000310 null 636985 ~ 645599 (-)