AMCG00004224 (crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593)


Basic Information

Item Value
gene id AMCG00004224
gene name crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38850789 ~ 38855317 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004224
TACAAAAGTAACTTGATAAGTTCTGTGAAAGGACATGCACCGTGTCTCTTTGCAGCCAGTAACGCTGCTGTCGCTCGGTGGACTGCTGTTCGCTGCTCAGAAACGTGTGGACGGAGCACACTGATAAACACTGCCAAAGCCGAGAGGACGTGGCTCCAGACAGTGAAACCCCCGCTGCCCCTCCATGGACAGCCGCCCTCCAAGAAGAAGCACTTTACCGATATAAGACAGCGTGATGGTCGGCCAACTACTGCAGGATTGTGTGCAAGGTGGAAAGGGCATTCAGCCGCAACAGCGTCCCTTGCCTTCCAGCCCAAACTTGGGGCTATTTCGTGTCAAACTCGGGGGACAATAACTCATAACAGCAGATTAAAGGGGTGTTGGGGGGACAGGACCCACTATTCCCAATGCTCTCTTCCCTCGACAAGGGGACTGCTCGTCCACGAAGGTGCCAAACCAGGACGTCCGGCGTTACTGCGGGGTTGCAGGGGCTACAGCAGCGCCGGTCCGGAGGAGCCGGTGGGACGGGGGCAAAAGGTTTCGTCTGAGGACAAATGTGAAGAGGACCCCCCTCCGCCTGGCACAGGGGACACACCGCGCCCCGAAGGGCTGTCTCATTTTAAAGAGCTGGTAGGCGCACATTGGTTACTGGGATACCTGATTGTAGAGGAAGATTTCCATTTATCTCTTGGCCTCTTTGTTTTAGCTGGAGTGACAGACTTGTTGGATGGCTACATCGCACGTAACTGGGCCAATCAGAAGTCTGCTTTAGGAAGTGCTCTGGACCCATTAGCTGATAAAATCCTCATCAGTGTCCTGTATATCAGCTTGACCTACGCACATCTCATCCCAAtcccACTTACTGCGCTGGTCATTTCAAGAGATGTTGCTTTAATTGCAGCTGTTTTTTATGTTCGCTACAAAACTGTTCCACCACCAAGAACCCTCAGCAGGTTTTTCAACCCATGCTATGCTACAGCTCAGTTGAAGCCAACATTTATTAGCAAGGTACATTACAGGACTGACAACAACAGCATCAGCATACAGTTATTACCACTA

Function

symbol description
crls1 Predicted to enable cardiolipin synthase activity. Predicted to be involved in cardiolipin biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human CRLS1 (cardiolipin synthase 1).

NR:

description
PREDICTED: cardiolipin synthase (CMP-forming)-like isoform X2

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K08744 CRLS; cardiolipin synthase (CMP-forming)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004224 True 1059 mRNA 0.52 6 38850789 38855317

Neighbor

gene id symbol gene type direction distance location
AMCG00004223 mcm8,LOC107738559 coding upstream 778 38840016 ~ 38850011 (+)
AMCG00004222 NA coding upstream 16821 38825821 ~ 38833968 (+)
AMCG00004218 NA coding upstream 107223 38731508 ~ 38743566 (+)
AMCG00004214 NA coding upstream 623978 38225556 ~ 38226811 (+)
AMCG00004216 NA coding upstream 630694 38213382 ~ 38220095 (+)
AMCG00004225 NA coding downstream 98820 38954137 ~ 38963635 (+)
AMCG00004228 NA coding downstream 394145 39249462 ~ 39293233 (+)
AMCG00004229 NA coding downstream 447392 39302709 ~ 39312703 (+)
AMCG00004230 NA coding downstream 542186 39397503 ~ 39436248 (+)
AMCG00004233 NA coding downstream 585809 39441126 ~ 39442709 (+)
G6627 NA non-coding upstream 73289 38775953 ~ 38777500 (+)
G6617 NA non-coding upstream 94537 38749914 ~ 38756252 (+)
G6598 NA non-coding upstream 234325 38616244 ~ 38616464 (+)
G6586 NA non-coding upstream 384146 38466396 ~ 38466643 (+)
G6585 NA non-coding upstream 432013 38416598 ~ 38418776 (+)
G6653 NA non-coding downstream 2801 38858118 ~ 38859005 (+)
G6667 NA non-coding downstream 71421 38926738 ~ 38927030 (+)
G6676 NA non-coding downstream 111361 38966678 ~ 38966890 (+)
G6684 NA non-coding downstream 267230 39122547 ~ 39148294 (+)
G6769 NA non-coding downstream 913067 39768384 ~ 39768607 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 1003069 37832623 ~ 37847720 (+)
G6369 NA other upstream 1850631 36999357 ~ 37000158 (+)
G6328 NA other upstream 1959043 36861547 ~ 36891746 (+)
G6314 NA other upstream 2076266 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2152904 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1471093 40326410 ~ 40341235 (+)
G7094 NA other downstream 2604259 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3355113 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3833462 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5762868 44618185 ~ 44640732 (+)

Expression


Co-expression Network