AMCG00004225


Basic Information

Item Value
gene id AMCG00004225
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 38954137 ~ 38963635 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004225
ATGTCGTTCAGATGTCTCATAACCTACTGTGTGGACGTCAAGAGCAGCATGTCTATTGTAAAACCCACAGCTGTGCTTCTCACGCTGCTTTTCTGCGTTGCCTGTGGCGGCCAGGTAGGAGATGTGCCCAAGCAAGAGCGGTTGTTTTTAAGTGCATTGGGTCTTTCTAGTCGCCCAAAGGCTGAGGGCCGCTTTCCAGTGCCATCCTTGTTGTGGAAAATATTCAAGAGAAAGACCATCGGGAAAGAAGCTGTAGACCCAGAGCACGACCCCTGCACAGTGTCGGAGTTCAAAGTGCGCGGAAACATTGTGCGCTTCATCCAGGACCAAGggAGACTGCTGCCTGTTTTCCACCGCCAATGTCCATCCTGTATAGAGAGGCACCTCTACTTCAACATGTCTGTGCTGCAGGACGTGGAGCAGCTCACGTTGGCGCAACTGGAAGTCACCTTCAACCAGGACCTGCACCGGCTGCCAAGACACGCAGACCTCTTCACCATGCACCTGTATAAAGTCATGAAGACCACGCTGAAGGGCGTTAAGCACCAGTCCAATCGGAAATTGCTGCTCTCGCAGTCTTTTCAACTCATACCGGGATCTATAACCTTGAATCTGACCGGGATGGCGGAGATTTGGAGAAAACCGGGGAAAAACTTCGGACTGGTGCTGACCATACAGCGCAGTGCACCCATCGACAACACGGACCCAGTAAGGTTAATGAACTTACAAAACGACGTGGAGCATAGTCTTGTAGGACATTTTCCCCATTTCTATGCGTCTCTTGTGGTGGTTTCTCTGAACCCCCTCCAGTGCAGATCCCGGAGGAGAAGAAGCGCCTATTATTTCCCAGTAACTCCTAGCAATGTGTGTAAAGCAAGGCGGCTGTACATTGACTTTAAGGATGTTGGCTGGCAAGATTGGATAATTGCTCCTCAGGGGTACATGGCTAATTACTGTAAAGGAGAATGCCCCTTTCCCTTAAGTGAAAGTCTTAATGGTACCAACCATGCCATTTTGCAAACGTTAGTCCACTCCTTTGACCCCACAGGTACCCCCCAGCCTTGCTGTGTTCCTGTAAGGTTGTCCCCTATCTCCATGTTGTATTATGACAACAATGACAACGTGGTATTGAGGCATTATGAAGACATGATAAAAGAGGACTGCCCTGAAACATGTCTCTCCTGGAAGAACGCACTGAGTTACTCCTCATCGCAGAAAAACCCTACAAGGAAAAGTGTAAAGAAATCGTACTCCAAGGACGCAGAGCATGACCACGACAGACCCGGACAGGAGGCATTGGCATTGATCATGGTCGCCGGGGTTCGTGCGCTCCTGGTGCTGCTGCTCTGTCAGGTGTTGCTCGGAGGCTCGGCCGGACTGATCCCAGAGGTTGGCCGAAGAAAGTTTAGCGAATCGGGGAAGGAAAGCCCGCAGCAGTCGGAGGACATCCTGAACGAATTTGAACTTCGCCTGCTCAACATGTTTGGCCTGAAGCGGAGACCCTCTCCCAGCAAAGGAGCGGTGGTGCCGCAGTACATGGTGGACCTGTATCACATGCATGCGGGCAGTGGGGACCAGGACCACCGCCGGGCCAGAGCCGGGCCGGGCCAGCATCAGGAGAGGGCTGCCAGCAGGGCTAACACCATCAGGAGTTTCCACCATGAAGAATCCCTGGAGTCGCTGTCGAGCATCAGTGGGAAAACAACTCAGCAATTCTTCTTCAACTTGACATCCATTCCTGGGGAGGAATTAATCACTTCAGCAGAAATGAGAATTTTTCGAGATCAAGTCCTTGGTGCCATCACAAACAATAGCAGTGGTAACCACCGCATTAACATTTATGAAGTTATAAAACCATCCGTTTCCTCAATGGAGCCTATAACGAGACTTCTGGATACTCGGCTAGTGCATCACAGCCAGAGCAAATGGGAGAGCTTTGACGTGAGCCCTGCAGTCATGCGATGGACCATGGAGGGGCTTACCAACCACGGTTTTGTGGTGGAGGTTGTGCATTTGGATAATGAACGGAGCGATTCAAAGAGACACGTGAGGATAAGCAGATCTTTGCATGAGGATGAAGAAACATGGCCGCAAATAAGGCCTTTATTGGTGACGTTTAGCCATGATGGCAAAGGACATGTTCTCCATAAGCGGGAGAAGCGACAAGCCAGATCAAAGCAAAAAAGGAAGCATAAATCAAGTTGCAGGAGGCATGCCTTGTATGTGGACTTCAGTGATGTTGGGTGGAATGACTGGATAGTTGCCCCACCAGGGTACCATGCCTTTTACTGTCAAGGAGAATGCCCTTTTCCTTTAGCAGACCACCTAAACTCCACAAATCATGCCATTGTACAGACTTTAGTCAACTCTGTAAACACAAACATTCCCAAGGCCTGCTGTGTCCCTACAGAACTCAGCGCCATTTCTCTTCTCTACCTTGATGAATATGAAAAGGTTATATTAAAGAACTACCAGGACATGGCTGTGGAGGGCTGTGGCTGCCGTTGAAAAACAATGTTGAGGACACTTTAATTCCCAATGAagactttatttatataaaagaaataaaaaacagctattttggaaaaaaagtatatataaatatatttatgtctaCGAAGAaaattgggaaaataaatattttaatcagagAGTTATtcctttaaatgatttttaaaatgtatttttgttgtacatgttttcaaacGGG

Function

GO: NA

KEGG:

id description
K21283 BMP2; bone morphogenetic protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004225 True 2710 mRNA 0.48 6 38954137 38963635

Neighbor

gene id symbol gene type direction distance location
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding upstream 98820 38850789 ~ 38855317 (+)
AMCG00004223 mcm8,LOC107738559 coding upstream 104126 38840016 ~ 38850011 (+)
AMCG00004222 NA coding upstream 120169 38825821 ~ 38833968 (+)
AMCG00004218 NA coding upstream 210571 38731508 ~ 38743566 (+)
AMCG00004214 NA coding upstream 727326 38225556 ~ 38226811 (+)
AMCG00004228 NA coding downstream 285827 39249462 ~ 39293233 (+)
AMCG00004229 NA coding downstream 339074 39302709 ~ 39312703 (+)
AMCG00004230 NA coding downstream 433868 39397503 ~ 39436248 (+)
AMCG00004233 NA coding downstream 477491 39441126 ~ 39442709 (+)
AMCG00004231 lamp5,LOC106571558 coding downstream 481564 39445199 ~ 39453488 (+)
G6667 NA non-coding upstream 27107 38926738 ~ 38927030 (+)
G6653 NA non-coding upstream 95132 38858118 ~ 38859005 (+)
G6627 NA non-coding upstream 176637 38775953 ~ 38777500 (+)
G6617 NA non-coding upstream 197885 38749914 ~ 38756252 (+)
G6598 NA non-coding upstream 337673 38616244 ~ 38616464 (+)
G6676 NA non-coding downstream 3043 38966678 ~ 38966890 (+)
G6684 NA non-coding downstream 158912 39122547 ~ 39148294 (+)
G6769 NA non-coding downstream 804749 39768384 ~ 39768607 (+)
G6771 NA non-coding downstream 806830 39770465 ~ 39770698 (+)
G6807 NA non-coding downstream 980865 39944500 ~ 39945055 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 1106417 37832623 ~ 37847720 (+)
G6369 NA other upstream 1953979 36999357 ~ 37000158 (+)
G6328 NA other upstream 2062391 36861547 ~ 36891746 (+)
G6314 NA other upstream 2179614 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2256252 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 1362775 40326410 ~ 40341235 (+)
G7094 NA other downstream 2495941 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 3246795 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3725144 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5654550 44618185 ~ 44640732 (+)

Expression


Co-expression Network