AMCG00004233


Basic Information

Item Value
gene id AMCG00004233
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39441126 ~ 39442709 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004233
ATGTTGAAATTGTCTGAGAAAGCAAACGAGCAGACTGGGGCTGCAATCCTGCTGGAAGCGATGTCCAATGACAAGATCCACTTGGCGAGGTTCATTTTGGACGCCCTGGACGGCAAGATCATCAATGCACGGACAGAGAGAGCTCAGACCCCTCTCATGTCTTCTGTCCTGCTTGCCGACACACACATGAGCTCTAAGTTCAtgaagctgctgctgcagagaggCGCAGACGTCAACTGCCAGGACGAGAGTGGACGCACTGCCCTGAGTTACGCGTGTGAAAGGGGGCACTTGGAGGCAGTGAAGACCCTCGTTCAGAATAATGCGGACCCTGAACTCGTAGACATGTGGGGGAACACGGCTCTGATTTATGCCGCGGTGGCCGGTCACACCTCGGTGGTGGCATTTCTAGTGAGAGCTTTTAAAAGGATGGGTCTGGAGATTGACCGACCCAACCGAGTTGGCAATTCTGCGGTTGAGGTCGCTAAGTTCCTGGGGCATAAAGAGTGTTTCCTGGCACTAACGAGTCACACCAAGAAGAGCCATGATAAAGAAATAGATGTGCTTCCACAGAGTCAATTTAAGAAACATGTACTCGAAGACAAGTACTCCAGAAAGTTTTCGGAACAAGTCAACTTTAAACATATCAATAGTCCCGTGTGCCCACCTATTGAGCCAAGATGCGCCATCACCGCAAATGAAAATGAACGCGCTGACGTTTCAGATCGGAAAAGGTCTCAAAGTGTGAGACATCGGCTGGCATCTATGGCTTCAATAGAcgagacagaaaaggaaagcgAGGGTGCTCTGCAGTCGCCAAGATTAGATGTTTACAATGGTCTTAGCGTAAGACCACGTGTGCGCTCTTGGAGTGTCCAATACAGTAACCAGAAACTGCAAGAGAAAACTAACAACGTGCATCTGCATTTACCACACTTACCTGCAGCCTCCGATCTCCAGATTTCAACTTTGCATTCGCCAAggccaaataaaaacacaccaaacaGTTCTGCTCCAAATCGGGTTCACACTTCTGTCTCCACCTCCACACTTTGGTCCAGTCCTCTTGGCATCCTGTTAACCCCGATTGCGGCGGCCAAAACTGGTGAAGACCAAGTGCAGATCGAAAAGCTGAAACAGTCCGACTTGGACACAGGAGTCAGACGATTCGACGACAGTTACTATCAGAAGAGGTGCAGTTTACCCACAAGCACTCTGCATCCAGCGCCCCCTGAGCGGTGGCTGCTGCCTTTGCGCAAACCAAAGAGTGGGCAGAAAAACGGTCACCAAGGATCGCCGAGTCCGACTGCGCCCATTGCCTCAACAACTATCACAGGACTAGGAAACAAACTATTCCGGCGATTCACTTTTCCCGAGTTCAGAAAGGTGGACAAGGACCAGCAGGAGGATAGATGCGCCGATGCGTCGGTCAGCAGCCCTGACTTATTAGCGCGGGGCATGTCCAGATCTGAGACTTATCCTTTCAGTAAAAAGCATCCCCAAGTGGGAAGCAAACCCAGCATCGACAGCATCAGCGCAGTGAAGTGCGAATTTGACTTTCCCTTTAAATCCACTGCATCCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004233 True 1584 mRNA 0.51 1 39441126 39442709

Neighbor

gene id symbol gene type direction distance location
AMCG00004230 NA coding upstream 4878 39397503 ~ 39436248 (+)
AMCG00004229 NA coding upstream 128423 39302709 ~ 39312703 (+)
AMCG00004228 NA coding upstream 147893 39249462 ~ 39293233 (+)
AMCG00004225 NA coding upstream 477491 38954137 ~ 38963635 (+)
AMCG00004224 crls1,LOC107663140,LOC107737905,LOC107678734,LOC103476593 coding upstream 585809 38850789 ~ 38855317 (+)
AMCG00004231 lamp5,LOC106571558 coding downstream 2490 39445199 ~ 39453488 (+)
AMCG00004240 NA coding downstream 116783 39559492 ~ 39559927 (+)
AMCG00004235 NA coding downstream 150234 39592943 ~ 39598254 (+)
AMCG00004236 hsp90ab1,hsp90bb coding downstream 396659 39839368 ~ 39846699 (+)
AMCG00004246 tmem151b coding downstream 442956 39885665 ~ 39892826 (+)
G6684 NA non-coding upstream 292832 39122547 ~ 39148294 (+)
G6676 NA non-coding upstream 474236 38966678 ~ 38966890 (+)
G6667 NA non-coding upstream 514096 38926738 ~ 38927030 (+)
G6653 NA non-coding upstream 582121 38858118 ~ 38859005 (+)
G6627 NA non-coding upstream 663626 38775953 ~ 38777500 (+)
G6769 NA non-coding downstream 325675 39768384 ~ 39768607 (+)
G6771 NA non-coding downstream 327756 39770465 ~ 39770698 (+)
G6807 NA non-coding downstream 501791 39944500 ~ 39945055 (+)
G6819 NA non-coding downstream 572558 40015267 ~ 40034323 (+)
G6840 NA non-coding downstream 645899 40088608 ~ 40088914 (+)
AMCG00004210 fam49a,znf395,LOC108440968,LOC106571599,LOC107696187,LOC107553485,LOC106608122 other upstream 1593406 37832623 ~ 37847720 (+)
G6369 NA other upstream 2440968 36999357 ~ 37000158 (+)
G6328 NA other upstream 2549380 36861547 ~ 36891746 (+)
G6314 NA other upstream 2666603 36774001 ~ 36774523 (+)
AMCG00004179 ptrhd1,LOC103399259 other upstream 2743241 36687630 ~ 36697885 (+)
AMCG00004257 dusp10,LOC106607590 other downstream 883701 40326410 ~ 40341235 (+)
G7094 NA other downstream 2016867 41459576 ~ 41507231 (+)
AMCG00004304 NA other downstream 2767721 42210430 ~ 42216362 (+)
G7329 fabp7,LOC108247051,LOC104945778 other downstream 3246070 42688779 ~ 42691109 (+)
AMCG00004355 hyou1,LOC100380749 other downstream 5175476 44618185 ~ 44640732 (+)

Expression


Co-expression Network