AMCG00004234 (pak5)


Basic Information

Item Value
gene id AMCG00004234
gene name pak5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39457144 ~ 39479080 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004234
actATAGTAAGAGGAAACCGGCCTCAGAAAGATGCCTCCATTAATGGCTTGCTGGAGGAGTTTGACAGCATTTCAGTCACACGGTCAAACTCTTTACGGAAGGAGAGCCCGCTGGCCCCCCACCAGTCAAACTCCAACCACGCGTCTGAGCAGCCCGATGAGAATGGCTTCAGCCACTACTACTCCAGATACTCGTGCGACCTGGACAGCTCCAAAGACTTCCCTGGGGAGCCCTACAAAGACAAGGGTTATTATGAAGGGGAATGGGGGAGACTATACCGATCAGCGaaacaaaatggacacacaGCCAGAACCAGAGGGGTGGACCCTTTCTACCCCGATGCTATGCCCCAAAAATCTGACTTCTCTAAAATGCCCCCTGACTATCACACCTACATGGAGACAAAGGTCCGGTCAGGGGAGGGTGCCGGGCCCAGTCGGGAATACTACAGGGCTTCCACCGGGAGTTCTGTACACGATTACAGGGAGCAACCTCAGGGCACGCCCTCGCGGACTTCCCTTCACAGTGAGAGAATTGACTACTCAGACAGTGACTGGGGGTATGGACCCCCAAGGGAGGACTACGAGAAACGACCAAAGTCATCCTATGTCAGCCAGACCAGTCCCCAACCAGCCATAAGACAACGATCCCGATCCGGGTCTGGGCTACAGGAGCCAAACTTGCCATACGGAGTTAGCGCTTTCAAATCGATGCAGCCAGGTCATTCGTACAGTTCGTACACttacccacgcctgtctgaaaCTCTGACCGCCTCGCCAGGCCTTCCAAAGgtgGATTATGATCGGGCATCCAGGGATGTGAGTCCACAGGTGCCTGGCACAGAAACATACCCAAGAGGCCCTACCAAACTACCTCAAAGTCAAACCAAGCTGAGTTACCCCAGCAACTTCCAGTATCCCCCCACATATCACAAGCCCTCCCCTTACCACCACCCCCCATCACAGCCCAGTCCCCCATACAGTGCTCAAGGTGCATACTCCCAACCCTCTTCCCCCTACATTCCTCCTGGTGCTTACCCCCCGCCCAGCTGGGGCTCCTCCTCAGACCAGCAGCCCTCCCGGGTCTCTCACGAGCAGTTCAGGGCCGCCCTGCAGTTAGTGGTAAACCCTGGTGACCCCCGGGAGTACCTGGATAACTTCATCAAGATCGGAGAAGGCTCCACAGGCATCGTGTGCATCGCCACGGAGAAGCACACTGGCAAGCAGGTGGCCGTGAAGAAGATGGATCTCCGCAAACAGCAGAGGAGAGAACTGCTCTTCAATGAGGTAGTAATAATGAGAGACTACCATCATGAAAACGTGGTGGACATGTACAACAGCTACCTAGTAGGCGACGAATTATGGGTAGTTATGGAGTTTCTGGAAGGTGGAGCTTTAACGGACATTGTTACCCATACCAGGATGAATGAGGAACAGATAGCCACAGTCTGCTTGTCAGTGTTGAAAGCTTTGTCTTACCTTCATACCCAAGGGGTTATCCACAGGGACATCAAGAGTGACTCCATACTTCTCACAAGTGATGGACGGATCAAACTCTCTGACTTTGGCTTCTGTGCACAAGTGTCCAAGGAGGTTCCTAAAAGGAAGTCATTAGTTGGCACACCTTACTGGATGGCACCTGAAGTGATTTCTAGGCTGCCGTATGGCACAGAGGTAGACATATGGTCTCTGGGGATCATGGTGATAGAAATGGTCGATGGAGAGCCTCCTTACTTCAATGAGCCTCCTCTACAGGCCATGAGGAGGATTCGAGACAACCTACCTCCACGGCTGAAGGAATCTCATAAGGTATCATCGGTCCTGCGTGGCTTTCTGGACCTGATGTTGGTGAGGGAGCCTTCGCAACGCGCCACGGCTCAAGAGCTGCTGCGTCACCCGTTCCTGAAACTGTCAGGACCCTCTTCCTGCATCGTACCCCTGATGAGGCACTACAGGCACCGCTGA

Function

symbol description
pak5 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within apoptotic process; cytoskeleton organization; and protein phosphorylation. Is expressed in central nervous system and spinal cord. Orthologous to human PAK5 (p21 (RAC1) activated kinase 5).

NR:

description
serine/threonine-protein kinase PAK 5 isoform X4

GO: NA

KEGG:

id description
K05736 PAK5, PAK7; p21-activated kinase 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004234 True 1965 mRNA 0.54 7 39457144 39479080

Neighbor

gene id symbol gene type direction distance location
AMCG00004232 NA coding downstream 311884 39125700 ~ 39145260 (-)
AMCG00004227 LOC107552893 coding downstream 338471 39103590 ~ 39118673 (-)
AMCG00004226 LOC106571740,LOC107742721 coding downstream 580469 38861765 ~ 38876675 (-)
AMCG00004221 NA coding downstream 617113 38833908 ~ 38840031 (-)
AMCG00004220 gpcpd1 coding downstream 672305 38757764 ~ 38784839 (-)
AMCG00004238 NA coding upstream 85836 39564916 ~ 39577969 (-)
AMCG00004237 LOC107552869 coding upstream 122447 39601527 ~ 39645178 (-)
AMCG00004239 NA coding upstream 178871 39657951 ~ 39662597 (-)
AMCG00004241 slc35b2,LOC106607600 coding upstream 379408 39858488 ~ 39867709 (-)
AMCG00004244 NA coding upstream 393981 39873061 ~ 39881929 (-)
G6668 NA non-coding downstream 530122 38926721 ~ 38927022 (-)
G6599 NA non-coding downstream 840679 38616219 ~ 38616465 (-)
G6588 NA non-coding downstream 990480 38466413 ~ 38466664 (-)
G6574 NA non-coding downstream 1201773 38255009 ~ 38255371 (-)
G6491 sf3b6,SF3B6,pm14 non-coding downstream 1887351 37567331 ~ 37569793 (-)
G6762 NA non-coding upstream 115861 39594941 ~ 39596639 (-)
G6770 NA non-coding upstream 289329 39768409 ~ 39768610 (-)
G6793 NA non-coding upstream 360088 39839168 ~ 39841082 (-)
G6818 NA non-coding upstream 531331 40010411 ~ 40014259 (-)
G6822 NA non-coding upstream 536154 40015234 ~ 40034323 (-)
AMCG00004203 NA other downstream 2075191 37324010 ~ 37381953 (-)
G6441 NA other downstream 2088322 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 2670022 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 2678082 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 2916303 36495772 ~ 36540841 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 362855 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 2585909 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 2897646 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 3923873 43402953 ~ 43450255 (-)
G7608 NA other upstream 5041834 44520914 ~ 44522213 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location