AMCG00004237 (LOC107552869)


Basic Information

Item Value
gene id AMCG00004237
gene name LOC107552869
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39601527 ~ 39645178 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004237
GTGCATCTTCTGCGGGGTGCTGGGGATGAAGTTACCATCACTGTTCAGTACCTGAGGGAAGCGCCATCATTTCTTAAGCTCCCATTAGGTTCTCCAGGACCATCTAGCAATCAGAGTAGCCGAACATCCTCCCCACTCTTTGATAGTGGTTTACATCTAAATGGAAACTCGACAAACACAGCACCGTCCTCACCTTCCTCACCCACAGCTAATGAACCAAAGTATGAGAAGCGCTGGCTCGACAGCTTATCTATCCCCCTGCTGATGGCCCGAGTCTCAAGATACAAAGCTGGAACTGATAAATTAAGGTCTAACAGTTTGGAAATTCTTGCCTTAGACGGAGTAAGCACCGGTATTCTTCAGTTTTGCACAGCCTCAGAATGCATGGACTGGCTTCGATCCATATCGACCAATATCAACGATTTAACACTACAAAATATGAAAATGGCCAACAAATGCTGCTCTGCTGATGACCAGATCATTCATATGGGCTGGGTCAGTGAAAAGCTTCTAGGAAGCGAGTCCCCCAAGCTATACAAATTCAAGTTTCTGGCTCTGAAAAGCtcctctgtatatatatttaacaccCCACCGgTCAGTACGTTAGACTGGGTAAGAGCTGAAACAATCCATAATCTCTGTGAGGTTCTCTTTAAGGTTCACAAGCTGTGGATTACTGAAGATTGCTGGTTACAAGCAAAACTGTACCTTGGCCTTCATCAAGACTGTGAACTTCAGGACAATAAGCCTTTCTGCTTCAGCGTAATGGCTGGACATGGAAAGAGCCACTACTTTAGTGTGGAGTTGGGCAGTGATTTGGCAGTTTGGGAAAAATCGTTCCAAAGAGCCATTTTTATGGAAGTGCAGAGAACAGGGAATATTCTGTGGAAATATAAATTTTCCCAGCTGAAGGGCTCCTCAGATGATGGGAAGACACGGGTGAAATTCCTTTTCCAGAATCCAGATACCAAACAGATAGAGATGAAGgaaCTAGAATTTGCAGACCTGACAGCTGTACTTCACtgcatacattcattcattgcAGCCAAAGTGGCCGCTGTGGATCCTGTCTTCATCGATAGTCAAAGCATTGCGAGAAAGTACATGTACACCAGCTGAACATGAACAGAATTCGAACACACATCCTTTGGCTCTTGGAGAGAACCTACATTTTTTGGCCGATGTATTTCAGCACTATTGTTTTCATACGCATTCTGTAAGATAACGAACAGCTTACAATCATTTCCAAACCAGAAAATAGTTTGGTCACTTTAAACTTAGACTGATTGACACAAAGCACATGCATAGTTTGCGATGATCACTAATTTGCTTGCACTTTATTGACAGTGGTCTTGTAACTTAATCATATTCCAACTTGGAGaaatgtgtgtgtcattgtagCTGTTGATGAAATTATGCTACATCCAATGTCTTAGTCATTTTTCTTGAGGTCCTAAATTCGTGATTTAAGACGGTTGCCTTGCAAACAAGGTGgataacattttcaattgttttggTTTGATTGAAAGGCTTTACAAATTGGTAGATTGTAATGGGTGCTCAAATCCCGATCAAattcagcaaataaaacaatcgcTCAGTATTTCACTGACATCCTGCATCTTACTCAGAAATACCTATCTGGAAGTGTAGCAGCCTTTTACCTTGAATACATATGTGGAAACCGTTCAGAATGGTGTACAGATATAATGTGATTCTTCAAGaagaatttgtttttcaaatacacattttattcatattactCAGTTTtcttcagtaataataatgtcttcCTTTCTCTCCACTATCAACTGCAAGTTCTCATTGTaatatattgataataatattttaatcttacatttgttttcatcccCTCAATGTCAAGATCTCAGTAAACTGATCAAAATCACACTAACAAATAGCTCCCTGTCctgaaacaacactgattaGAAGAACAAATAAGGATTGCATTGCATCATAGTACCTCCAAATACAACACTGCAGCACTACTGAGTTTTCAGTTAAGGAAGGAAATTCTGACACTTTTTCTGCTCGTGTCACTTTCAGTAAAGCCTGATTACTTTAGAGGTCTGTCACGCAAATGCCAAccagtgtttgtttaatttctgagGGGGTGTTGATGAGTTCAGGCAAGAAGGATGTAGACTGAAGAAAAATCTCTACAGACTTTTAAGTACAACATGATTCATTACATAACTCTGCCCAGTGTGTAGTTATAAATGTGAAGTGCAGTCTTAATAAGACAGAgtacactgtttattttgtttttatttattctgatgtAATAGAGATTAAAACTAACCAAGAGAATCAATCTGACATTTAATTATCAGAAAGCTCCTAATGGATGGGCTTAATATTATTTAGACTGGTATTTCAGTGGGAAGGCAATTAATCCAGGCAATAGTTTTACAGAGAGAAAAGTAATAGAAGTGAAACAGTGTTTTCTCCTCCACATTTGTGGACAATACATCAACATATTACTTATTTGAACTCTATAGTAGAATAaaagtaattcaattaaaatttaattatcACCAAAAATTGATATTTGGATTCTGAAACCCCCACAATGTATCGTATATCATGTACTCTCCCATTTAActgttaatacaaaaatagaagcattatttcttattttattcctaattatttcttatttcataCTTCAATTGATCTTATATTTTAAGAATCATTCTAGCCTCTGCCGTTGTGCCTTAGACTGAATGACATGAGACAAAGTTTAACTTTCAATTGACCATGCATTATGATTTGACTACAATATTTCACTGAAATGAAACTATGAAAGGATTTCTTAAAACTAGAAGTATATAAAAGGACAAAACGTTTCAGAACACAAGTGATttctcactgtaaataaataaacttttatcTTGGAAGCACATATGGACTTCTTCAAGTCTGATTTTCACATTGACCTGTGTTATCATTGAAAAGGTGATTATTACACTGATGAAAAATGTAGCAGCTACTATCTGTGAAACTTTTTTGTAA

Function

NR:

description
PREDICTED: gamma-2-syntrophin-like

GO: NA

KEGG:

id description
K24065 SNTG; gamma-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004237 True 3036 mRNA 0.37 10 39601527 39645178

Neighbor

gene id symbol gene type direction distance location
AMCG00004238 NA coding downstream 23558 39564916 ~ 39577969 (-)
AMCG00004234 pak5 coding downstream 122447 39457144 ~ 39479080 (-)
AMCG00004232 NA coding downstream 456267 39125700 ~ 39145260 (-)
AMCG00004227 LOC107552893 coding downstream 482854 39103590 ~ 39118673 (-)
AMCG00004226 LOC106571740,LOC107742721 coding downstream 724852 38861765 ~ 38876675 (-)
AMCG00004239 NA coding upstream 12773 39657951 ~ 39662597 (-)
AMCG00004241 slc35b2,LOC106607600 coding upstream 213310 39858488 ~ 39867709 (-)
AMCG00004244 NA coding upstream 227883 39873061 ~ 39881929 (-)
AMCG00004243 NA coding upstream 261091 39906269 ~ 39911511 (-)
AMCG00004242 NA coding upstream 289139 39934317 ~ 39942767 (-)
G6762 NA non-coding downstream 4888 39594941 ~ 39596639 (-)
G6668 NA non-coding downstream 674505 38926721 ~ 38927022 (-)
G6599 NA non-coding downstream 985062 38616219 ~ 38616465 (-)
G6588 NA non-coding downstream 1134863 38466413 ~ 38466664 (-)
G6574 NA non-coding downstream 1346156 38255009 ~ 38255371 (-)
G6770 NA non-coding upstream 123231 39768409 ~ 39768610 (-)
G6793 NA non-coding upstream 193990 39839168 ~ 39841082 (-)
G6818 NA non-coding upstream 365233 40010411 ~ 40014259 (-)
G6822 NA non-coding upstream 370056 40015234 ~ 40034323 (-)
G6838 NA non-coding upstream 432839 40078017 ~ 40078283 (-)
AMCG00004203 NA other downstream 2219574 37324010 ~ 37381953 (-)
G6441 NA other downstream 2232705 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 2814405 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 2822465 36769048 ~ 36779062 (-)
AMCG00004178 NA other downstream 3060686 36495772 ~ 36540841 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other upstream 196757 39841935 ~ 39849123 (-)
AMCG00004302 NA other upstream 2419811 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 2731548 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 3757775 43402953 ~ 43450255 (-)
G7608 NA other upstream 4875736 44520914 ~ 44522213 (-)

Expression


Co-expression Network