AMCG00004241 (slc35b2,LOC106607600)


Basic Information

Item Value
gene id AMCG00004241
gene name slc35b2,LOC106607600
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 39858488 ~ 39867709 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004241
GGGAGTTATGTGGAGCTGGAAAGTGAACACATAGGCGATTCATTGGTGTGAGAGGCGGGGAAAGGacacttcattttttcatcAATTTTATGTTGCTGgaattgtcatttaaatattgGTTCATTggcagtttaaataaatgagatACTGTGGTGTCAGCAGTGAAAGCTTACGGCGCGGCTGAGAAGCTGCACTACAGTTGGGTGAGACCAATAAGATGCCTTCTTTTTCGTGGAGGTTTTGGTCAGGGCTGGTCCTGGTCATGCTGCCCTTAGCCCAAGCTGCTGAAGGGGAAACGCTTTTACTGGGAACTTGGACTGATTTCTGGTTGTTCCGTTTCCTTCTTAATGTCTTGGGATATGCTACAATTGCTGTCCCTGGCTTCCTCCTCATCAAATACTTGAAGAGGATTAACTACCTTGAAACAGGTCGTGGCATTTGCTTCCCTCTTGTGAAATCCTGTGTTTTTGGGAATGAAGCCAAATCTGGTCTGCTAGAGGAAGTGCCTGCACCATCAAGGAATGAGGCAACAGAATCGTCTTCAGCCAGACAAGCCTTTAAACTGTTGTTCTGCGCCGCTGGACTACAGGTTTCATACTTAACATGGGGTGTCTTACAAGAGCGCGTCATGACACGCACCTATGGGGCTACCAGCACAGAGGAGGGTGAGAGGTTCAAGGATTCCCAGTTCCTGGTCTTCATGAACCGCATCCTTGCCTTGACAGTGGCTGGCATTTACTGCTCCCTCATCAAACAACCTCGGCATGGGGCCCCAATGTACAAGTACTCCTTCGCCTCCCTTTCCAACATCCTGAGTAGCTGGTGCCAGTACGAGGCCCTCAAGTACATCAGCTTTCCCACCCAGGTGCTAGCCAAGGCTTCCAAGGTCATCCCAGTAATGCTGATGGGGAAACTGGTTTCCCACAAAAGCTACGAGTACTGGGAGTACTTCACGGCTGTGCTCATCTCTGTGGGGGTCAGCATGTTTCTGCTCTCCAGCAATGCCAATAAACATCCCTCCACCGTGACCACCTTCTCCGGCGTGATCATCCTGGGCGGCTACATCATTTTCGACAGCTTTACCTCCAACTGGCAGGACAACCTGTTCAAGTATAAGATGTCGTCAGTACAGATGATGTTTGGGGTGAACCTCTTCTCTTGCCTCTTCACAGTGGGTTCTCTTCTGGAGCAGGGGGCCTTCTTTGACTCTTTGGCCTTCATGAGTCGCCACTCGGAGTTCACGTTCCACGCTGTGCTGCTCTCTGTGTGCTCCGCCTGCGGCCAGCTTTTCATCTTCTACACAATTGGCCAGTTTGGTGCCGCCGTCTTCACCATCATCATGACCCTGCGCCAGGCCATCGCCATTCTCCTGTCCTGCTTCCTGTATGGCCATGCTGTTACCATGGTGGGAGGGCTGGGAGTGGCCGTCGTCTTCCTCGCCCTTTTTCTCAGGGTCTATGCTCGGAGCCGCATGAAGAAGAGGAGCAAAAAGGCGGTGCAGAGCTCGTCTCCCGTGCTGAAGGTTTAAGGACATGAACTGTATATAGAGAGACTTTAATCCCagttatgtttaatgttttatttgctctttttattttatttcattggttttgtattttataaagtaaAGGTACGTAAAAAGGGAGTTGCCTTTATTggatgtatttgttattgtatgtgtgtgtcggAAGGTTAGGAAGATGACGACTAATGCACAAAGTCTTGCCACCCACCTCTTAATTTAACTGCTCCATTATCTGACACATGCACCTTTCAACTGCCAGAGTCTGTGACTGTTGGCGTGtttctgtaatttgtttaaatgggtCCTGAAAGCAGCATTAACGCCATACTGGAGGAGATGCCAGGTGCAGATGTGCAAGAGCATTATTACTGTTATACATCATGGGTCTTCTCTCCACTCACGCAGGGAGTGTTGCAGTTTAGTTTTCACTGATGATTTGGGACTTGGTAAAAGAAAGAAGATCAGACTGGATGCAGTAATGATTTCGTCCCCATCAGTTGCAATAACCATCAGACACTGCTACATCCAAGAGATGACTTTGAAGTTTTGATCAGTTACACAGTCCCCAGTGGAGACCAAGGTTAGCCCTCTAgtcccttttaaaatgcattaaacattgAAGCATCTGTGGATCTCCGTAAGCAAAAGGTTTTAGgcatcatccatccatccatccatccatccatcctcctatttgatcatgttttgaaatggtttttatattttctgtgaaatgcaaccttgcttttaaaatattcgGGACGGTTTTAGCCCTATATTTAAACAAAGCTTTTCTTTACATATTGAAATGCTAATGAAGTCTTAaacaagactttttttttcctgcaaaaaaCTATTTGTGATGATAACTTTAATCTGACGTACTGAATTGGAGTTGTGTAACATTGCCTTCGTTGGCTACATTACTAATGCTTTCTTTACTAAACCAAAGGTGGCAGAGATAACGGAAGCCCTGCCCAGCTGCTATAGGACTACACTATTgaattactttacttttttagttgtttaatttaaaaatgttaattacagaGGTGTCACTTGTTTAGCCCATGCAGTTCCACTTTCCCTGTTCTGGTCActgtagttttaaatatattatttaaacactcattgctgttttattaccattattgcCCTATAGTTTGTCTTCACACTTCACACATTCCACGTATGATTAACGTGATCTATACTTTGCTACAGATCTATGCACATAGCAGCTCATCtggtaaagaaaatgaaaaaaaaaatcccatttaaaattGCACAATTTCACAGTTAACTTTCATAATTCAGCATTAGCATCACACCATTacttcacacaaaacaaatgtcattccTTTCAGAGAGAAAAAGGAAGCGTATTCACACTATAAAAGTCATTGTCAATTATTACCAGGGGAATTTACCATTTTGCAACCCATGAACCATGAAGTGTATGAGCAACCAATTACAGTTGAGTATCGAGCAGGTAAATTCCCCTGGAGTGAGGAGGCTGGGGCCATTTAAAAAGACTTTTACCACATCTTTTGGATTTATGAAGtaaatttaagttaattaaattttGGTCTTAATGATGAGTTAGATTCTGTCCCTTTGCTGCTTTCTTCTTGGAGCAATGCAATTATGAAATTGTATTGCATTAAGTAATATTTTCTGCTGATTTTgaagtaataagtaataatcTTATTTTTTAGATAAGCTGGTCATCACACACACCTCACATATAAACAACATCTATTATAAagattttataaatgaagataACTTGTTGGTATGCACCAAAGCTTCATTCTTTATATGTGTAGGAAACTACGCAAATACAAGCATATATTGGTATCCTCCTTAACTTTGAAATCTGAAGTTGCCTATCCTCTAATAATTTGTCCTTTACCTAAATTCGTGAAATTATATGAATATGGAAATTGGAAGCAGATTTACCATTTTATTATGTCACACTTAGAATTGGGTACATGACAGTGTTCTGAATGAACACATGTGCTGTTATCAAGGCTCACAAATCCCTTGTTCGTGCTGCACCATCTTATCCAACATGCACTCTACACTTTCGACTCCGGCTTAATAGCCGACTGAAGATCCCGATATTCCCAGTACCTAGATTTTTTGAGGACTCAATTGTTCACATTTTCCATCTCCTCTCTTGAATGCATATATAAAGTTAAGGTTGCATACAAGTACATCAGCGCTAAGTCACTGTGACAGCCTTGTTCTCTCTCGTTAATCAGTTATTCACAGCCTGGAATTAACCAATAGTCTGGAAAGAAACCTCACCTAATAGGGTCAAATTAGCGTCTCAAACGGCAAAGAAACATCTGTTAGACAAGCAGTAGAAGAGCAGTCTGCAAACTTACTGTGCAAATGTGCCTTTCCAGCTGCAACTTCtgctttaaatcatttttatttagtttatctTGTTATGAAtaatctttttcctttttaccaTTTCTAATAAGAAAtccattgtttaaaaatatttgtagagTATATTCTGATGATTATGTGACCAGTAACCAGACCATTTTTATATAATGCAGTGGAAGAAAAAAGGTTTGATCTTATTATCCAAGTAATGCAATAATTGTGCGGCTGTTAAACATCAAGTGCAATAAAGCATAATAATCTGTGCCGTTTCAAAAAGGGTGATTGCCAGCCTGCCACAACATTGATAGGGTCCAGGGATACACAGCAACTACTATCAAGATACAATTACCCAGTACTTACAACTGGTATTACAGTACTGAAGCTGAAGTCTGTACTTCATTTTGACAACAGATACCAATTTCTTAATTTAcaatgtttgcattttcaagCACTCTCGCTCAATAGTTGTGAATGGtgactgattttattattacagagaATGGGACTCCactttcaggttttttttgtgtgtcaaaTTCATGaatgtgtcattgttttttgttgtttttgctgtgaATTAAGTGAAATCATAATTGGTGAGCTATTGGGACCAGAATAAATGGGTGAGATGTTAGAGATAGAAAGTTGAACTGAGGTTCTGTATTTTCCCACAAAATTGATCAGTTTCCTAAAATTGTAGTGTTGCAGTTTCACTATGTATCCTGATTGCATTGGGGATTTCTGTGTAAGAGAGTATGGGTGATGCTGCCTGCGTTTGAATGTTGAATGTAGGGATTTCTACAAtgctttacacattttacacGTTTAGTATAAACGTATACTGCTGTATTCCATAACACTACTGAATGTTATAACTTTCCTGAGAAAGGTACTGCTGCAGTTATGACTGCTATGGGAGTAATTTTCAAATAGTAGCACAATGAAAAAATGGCATGGTCTAatatgataaatacattataattttaaaacagcCACACTTACTTTTTCAAATATGACAATTTTGTATCTTTATTGTACTGATTAAATCCAAAAGGTTGTATCAAAGTAGACTTcatatgtgaaataaaa

Function

symbol description
slc35b2 Predicted to enable 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity. Acts upstream of or within several processes, including osteoblast differentiation; proteoglycan biosynthetic process; and retinal ganglion cell axon guidance. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Orthologous to human SLC35B2 (solute carrier family 35 member B2).

NR:

description
PREDICTED: adenosine 3'-phospho 5'-phosphosulfate transporter 1 isoform X3

GO: NA

KEGG:

id description
K15276 SLC35B2, PAPST1; solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004241 True 5014 mRNA 0.40 4 39858488 39867709

Neighbor

gene id symbol gene type direction distance location
AMCG00004239 NA coding downstream 195891 39657951 ~ 39662597 (-)
AMCG00004237 LOC107552869 coding downstream 213310 39601527 ~ 39645178 (-)
AMCG00004238 NA coding downstream 280519 39564916 ~ 39577969 (-)
AMCG00004234 pak5 coding downstream 379408 39457144 ~ 39479080 (-)
AMCG00004232 NA coding downstream 713228 39125700 ~ 39145260 (-)
AMCG00004244 NA coding upstream 5352 39873061 ~ 39881929 (-)
AMCG00004243 NA coding upstream 38560 39906269 ~ 39911511 (-)
AMCG00004242 NA coding upstream 66608 39934317 ~ 39942767 (-)
AMCG00004247 NA coding upstream 82983 39950692 ~ 39951933 (-)
AMCG00004245 NA coding upstream 84412 39952121 ~ 39967735 (-)
G6793 NA non-coding downstream 17406 39839168 ~ 39841082 (-)
G6770 NA non-coding downstream 89878 39768409 ~ 39768610 (-)
G6762 NA non-coding downstream 261849 39594941 ~ 39596639 (-)
G6668 NA non-coding downstream 931466 38926721 ~ 38927022 (-)
G6599 NA non-coding downstream 1242023 38616219 ~ 38616465 (-)
G6818 NA non-coding upstream 142702 40010411 ~ 40014259 (-)
G6822 NA non-coding upstream 147525 40015234 ~ 40034323 (-)
G6838 NA non-coding upstream 210308 40078017 ~ 40078283 (-)
G6872 NA non-coding upstream 258839 40126548 ~ 40126792 (-)
G6939 NA non-coding upstream 731245 40598954 ~ 40602815 (-)
G6792 hs90b,hsp90bb,hsp90ab1 other downstream 9365 39841935 ~ 39849123 (-)
AMCG00004203 NA other downstream 2476535 37324010 ~ 37381953 (-)
G6441 NA other downstream 2489666 37367985 ~ 37368822 (-)
AMCG00004188 srp9,LOC107553440,LOC107601484 other downstream 3071366 36783743 ~ 36787122 (-)
AMCG00004189 NA other downstream 3079426 36769048 ~ 36779062 (-)
AMCG00004302 NA other upstream 2197280 42064989 ~ 42067664 (-)
AMCG00004313 NA other upstream 2509017 42376726 ~ 42531006 (-)
AMCG00004336 NA other upstream 3535244 43402953 ~ 43450255 (-)
G7608 NA other upstream 4653205 44520914 ~ 44522213 (-)
AMCG00004364 NA other upstream 4672454 44540163 ~ 44561575 (-)

Expression


Co-expression Network